miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19078 3' -58.8 NC_004684.1 + 59321 0.67 0.566532
Target:  5'- uCGAUGGCGCUGGcaaUGaGCCGcacccuGCUGGc -3'
miRNA:   3'- -GCUACCGCGACU---AC-CGGCcac---UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 7090 0.67 0.556219
Target:  5'- cCGA-GGCcCUGGaGGCCGccgagGACCGGg -3'
miRNA:   3'- -GCUaCCGcGACUaCCGGCca---CUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 14500 0.67 0.545961
Target:  5'- aCGccGGuCGCcGGUGGCaCGGUGACgGu -3'
miRNA:   3'- -GCuaCC-GCGaCUACCG-GCCACUGgCc -5'
19078 3' -58.8 NC_004684.1 + 56722 0.67 0.545961
Target:  5'- uGA-GGCGUUcGGUGuGCCGGUcGACCu- -3'
miRNA:   3'- gCUaCCGCGA-CUAC-CGGCCA-CUGGcc -5'
19078 3' -58.8 NC_004684.1 + 15245 0.67 0.544939
Target:  5'- uGGUGGCGgUuacgucGAUGGCCuggccaacacccuGGUGGCCa- -3'
miRNA:   3'- gCUACCGCgA------CUACCGG-------------CCACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 51704 0.67 0.535765
Target:  5'- cCGGUGGCGUcGGUGccGCCGcUGGCCa- -3'
miRNA:   3'- -GCUACCGCGaCUAC--CGGCcACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 15285 0.67 0.535765
Target:  5'- gCGGUGcaccUGCUGGgccuggucgacgUGGCCGGUGGCaUGGa -3'
miRNA:   3'- -GCUACc---GCGACU------------ACCGGCCACUG-GCC- -5'
19078 3' -58.8 NC_004684.1 + 1266 0.67 0.528668
Target:  5'- aGAUGcGCugGCUGGUGGCCauguuccGGUacgcgcgcgacgcguGGCCGGa -3'
miRNA:   3'- gCUAC-CG--CGACUACCGG-------CCA---------------CUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 50027 0.67 0.525636
Target:  5'- uCGgcGGCaGC--GUGGCCGGUGcCUGGc -3'
miRNA:   3'- -GCuaCCG-CGacUACCGGCCACuGGCC- -5'
19078 3' -58.8 NC_004684.1 + 47137 0.67 0.525636
Target:  5'- uCGGUGGCGUaGgcGGCCccGGUGcCCaGGa -3'
miRNA:   3'- -GCUACCGCGaCuaCCGG--CCACuGG-CC- -5'
19078 3' -58.8 NC_004684.1 + 63827 0.67 0.522612
Target:  5'- uGAUGGUGCgGAUGGCgcggcgcacgcuguCGGUG-CCa- -3'
miRNA:   3'- gCUACCGCGaCUACCG--------------GCCACuGGcc -5'
19078 3' -58.8 NC_004684.1 + 53492 0.68 0.515581
Target:  5'- aGGUaGGCGUcGAUGGCgGGgaagagGuCCGGg -3'
miRNA:   3'- gCUA-CCGCGaCUACCGgCCa-----CuGGCC- -5'
19078 3' -58.8 NC_004684.1 + 64527 0.68 0.514579
Target:  5'- cCGAUGacgcccaGCgGCUcGgcGGCCuuGGUGACCGGg -3'
miRNA:   3'- -GCUAC-------CG-CGA-CuaCCGG--CCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 34861 0.68 0.505604
Target:  5'- ---cGGCGCgaacguugUGGUGG-CGGUGGcCCGGa -3'
miRNA:   3'- gcuaCCGCG--------ACUACCgGCCACU-GGCC- -5'
19078 3' -58.8 NC_004684.1 + 1074 0.68 0.49571
Target:  5'- uGgcGGCGCUGGacgUGaUCGGUGACCaGGc -3'
miRNA:   3'- gCuaCCGCGACU---ACcGGCCACUGG-CC- -5'
19078 3' -58.8 NC_004684.1 + 38835 0.68 0.485906
Target:  5'- cCGGUGGCGg-GGU-GuuGGUGACCGc -3'
miRNA:   3'- -GCUACCGCgaCUAcCggCCACUGGCc -5'
19078 3' -58.8 NC_004684.1 + 21990 0.68 0.485906
Target:  5'- aGGUGGUGCgccagGGuCCGGUGgaGCUGGu -3'
miRNA:   3'- gCUACCGCGacua-CC-GGCCAC--UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 25994 0.68 0.476195
Target:  5'- cCGcUGGCGCUccUGG-CGGcGGCCGGg -3'
miRNA:   3'- -GCuACCGCGAcuACCgGCCaCUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 18462 0.68 0.476195
Target:  5'- aCGAcGGCaccgaGCUGGUGcuGUCGGUGuCCGGc -3'
miRNA:   3'- -GCUaCCG-----CGACUAC--CGGCCACuGGCC- -5'
19078 3' -58.8 NC_004684.1 + 21066 0.68 0.476195
Target:  5'- ---cGGUGCUGAccgggcaccugGGCCGGUcaGugCGGg -3'
miRNA:   3'- gcuaCCGCGACUa----------CCGGCCA--CugGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.