miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19078 5' -48.5 NC_004684.1 + 14347 0.71 0.881003
Target:  5'- cCACCGUgCUgggcaccgCGcAGGUGuACGCCGACu -3'
miRNA:   3'- -GUGGCAaGAa-------GCuUUUAC-UGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 9278 0.71 0.881003
Target:  5'- gGCCGaug-UCGAGuucccGACGCCGACg -3'
miRNA:   3'- gUGGCaagaAGCUUuua--CUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 30614 0.72 0.829542
Target:  5'- gGgCGUUCUUCGAggGAGUGAC-CgCGACg -3'
miRNA:   3'- gUgGCAAGAAGCU--UUUACUGcG-GCUG- -5'
19078 5' -48.5 NC_004684.1 + 60676 0.72 0.820138
Target:  5'- uCGCCuUUCUUCGGcu-UGcucGCGCCGACg -3'
miRNA:   3'- -GUGGcAAGAAGCUuuuAC---UGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 42214 0.72 0.820138
Target:  5'- gGCCaaccaggUCGGAGAUGGCGUCGGCa -3'
miRNA:   3'- gUGGcaaga--AGCUUUUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 59307 0.72 0.800713
Target:  5'- gGCCGgug-UCGGGgucGAUGGCGCUGGCa -3'
miRNA:   3'- gUGGCaagaAGCUU---UUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 47680 0.72 0.800713
Target:  5'- gCGCC-UUCUugUCGAAGGUGAUGCUGGu -3'
miRNA:   3'- -GUGGcAAGA--AGCUUUUACUGCGGCUg -5'
19078 5' -48.5 NC_004684.1 + 20142 0.73 0.790713
Target:  5'- uGCgGUUCUUCGccGGUGACGgcCCGGCc -3'
miRNA:   3'- gUGgCAAGAAGCuuUUACUGC--GGCUG- -5'
19078 5' -48.5 NC_004684.1 + 45851 0.74 0.749085
Target:  5'- uGCCGcgC-UCGuuGAUGGCGUCGGCg -3'
miRNA:   3'- gUGGCaaGaAGCuuUUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 55938 0.74 0.738331
Target:  5'- gACCGggg--CGAGGccGACGCCGACg -3'
miRNA:   3'- gUGGCaagaaGCUUUuaCUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 16103 1.09 0.00646
Target:  5'- gCACCGUUCUUCGAAAAUGACGCCGACc -3'
miRNA:   3'- -GUGGCAAGAAGCUUUUACUGCGGCUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.