miRNA display CGI


Results 21 - 40 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 3' -57.2 NC_004684.1 + 11400 0.66 0.622547
Target:  5'- uUGCCGCGCGcgauguguucgccguAGACgccgaugacccGCUGGAGcGCg-GCg -3'
miRNA:   3'- -ACGGUGCGU---------------UCUG-----------UGACCUC-CGgaCG- -5'
19079 3' -57.2 NC_004684.1 + 45226 0.66 0.618217
Target:  5'- aUGCgGCGCuuGGUGCUGGucAGGCCcgGCa -3'
miRNA:   3'- -ACGgUGCGuuCUGUGACC--UCCGGa-CG- -5'
19079 3' -57.2 NC_004684.1 + 37723 0.66 0.618217
Target:  5'- cGCC-CgGCGAGG---UGGAGcGCCUGCu -3'
miRNA:   3'- aCGGuG-CGUUCUgugACCUC-CGGACG- -5'
19079 3' -57.2 NC_004684.1 + 34731 0.66 0.618217
Target:  5'- cGUCugGCAcgucgucguGGACGaguagGGAGGCC-GCc -3'
miRNA:   3'- aCGGugCGU---------UCUGUga---CCUCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 36228 0.66 0.618217
Target:  5'- gGCCAcCGcCGAGAcCGCUGGcguGGCCa-- -3'
miRNA:   3'- aCGGU-GC-GUUCU-GUGACCu--CCGGacg -5'
19079 3' -57.2 NC_004684.1 + 11684 0.66 0.617135
Target:  5'- cGCCGCGCAAGcagcugcGCACUacgacaacgcuGAcGCCUGCu -3'
miRNA:   3'- aCGGUGCGUUC-------UGUGAc----------CUcCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 14654 0.66 0.607401
Target:  5'- gGCCACGac-GAC-CUGGAGGaCaGCg -3'
miRNA:   3'- aCGGUGCguuCUGuGACCUCCgGaCG- -5'
19079 3' -57.2 NC_004684.1 + 62352 0.66 0.607401
Target:  5'- cGCCGggUGCcAGACGCgUGGuGGCCaccguUGCc -3'
miRNA:   3'- aCGGU--GCGuUCUGUG-ACCuCCGG-----ACG- -5'
19079 3' -57.2 NC_004684.1 + 54639 0.66 0.607401
Target:  5'- aGCCGCGCGGGcCAagaGGGcgucgaccucGGCCUGg -3'
miRNA:   3'- aCGGUGCGUUCuGUga-CCU----------CCGGACg -5'
19079 3' -57.2 NC_004684.1 + 40013 0.66 0.607401
Target:  5'- aGCaCGCGCuccGGCGCgaUGGuGGCCUuggGCa -3'
miRNA:   3'- aCG-GUGCGuu-CUGUG--ACCuCCGGA---CG- -5'
19079 3' -57.2 NC_004684.1 + 2324 0.66 0.607401
Target:  5'- -aCCGCGCAGGACgaACUGGcGGCg-GUc -3'
miRNA:   3'- acGGUGCGUUCUG--UGACCuCCGgaCG- -5'
19079 3' -57.2 NC_004684.1 + 6596 0.66 0.607401
Target:  5'- cGCCACGCAccgAGGCGaguucCUGGucGCCa-- -3'
miRNA:   3'- aCGGUGCGU---UCUGU-----GACCucCGGacg -5'
19079 3' -57.2 NC_004684.1 + 21176 0.66 0.607401
Target:  5'- cGCCACGUucGAGGaACUGGGcGGCUauacGCa -3'
miRNA:   3'- aCGGUGCG--UUCUgUGACCU-CCGGa---CG- -5'
19079 3' -57.2 NC_004684.1 + 4518 0.66 0.60416
Target:  5'- gGCCgggauccuguuccgGgGCGAGACcCcGGAGGCCcGCu -3'
miRNA:   3'- aCGG--------------UgCGUUCUGuGaCCUCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 50801 0.67 0.596605
Target:  5'- gGCCACcaGC-AGACGCUGGcGGCg-GUa -3'
miRNA:   3'- aCGGUG--CGuUCUGUGACCuCCGgaCG- -5'
19079 3' -57.2 NC_004684.1 + 11155 0.67 0.596605
Target:  5'- cGCCGuCGguGGAC-CUGGccGCCaGCg -3'
miRNA:   3'- aCGGU-GCguUCUGuGACCucCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 18256 0.67 0.596605
Target:  5'- cGCCAUcgacgGCAAcGGCACgcccGGccGCCUGCu -3'
miRNA:   3'- aCGGUG-----CGUU-CUGUGa---CCucCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 39024 0.67 0.585839
Target:  5'- gGCCAgcuCcCAGGACACccgguagacGGuGGCCUGCu -3'
miRNA:   3'- aCGGU---GcGUUCUGUGa--------CCuCCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 51512 0.67 0.585839
Target:  5'- gGCUGCaCAGGGcCGCUGGcGGCCacgUGCu -3'
miRNA:   3'- aCGGUGcGUUCU-GUGACCuCCGG---ACG- -5'
19079 3' -57.2 NC_004684.1 + 14168 0.67 0.585839
Target:  5'- gUGCCACGUGguggugcuGGGCACccUGGAcgcauuccuGGCCaGCg -3'
miRNA:   3'- -ACGGUGCGU--------UCUGUG--ACCU---------CCGGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.