miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 3' -62.2 NC_004684.1 + 35778 0.66 0.392892
Target:  5'- --cGCGCGCCGCGCuccaucGUgGCGCaguccccgGCGAc -3'
miRNA:   3'- ggaCGCGUGGCGCGu-----CGaCGCG--------CGCU- -5'
19080 3' -62.2 NC_004684.1 + 11820 0.66 0.392892
Target:  5'- gCgaGCGCGCCGCuguccgGCGaCUG-GCGCGAc -3'
miRNA:   3'- -GgaCGCGUGGCG------CGUcGACgCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 5020 0.67 0.385241
Target:  5'- uCCUGaUGgACCGCGacgacgaggugcgcaGGCUgGCGCGCGc -3'
miRNA:   3'- -GGAC-GCgUGGCGCg--------------UCGA-CGCGCGCu -5'
19080 3' -62.2 NC_004684.1 + 35489 0.67 0.384397
Target:  5'- aCUGCGCAa--CGUcGCUGCGCGuUGAg -3'
miRNA:   3'- gGACGCGUggcGCGuCGACGCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 61333 0.67 0.376025
Target:  5'- aCCaGCGCGgCGUGguugguCAGCUGgGcCGCGAg -3'
miRNA:   3'- -GGaCGCGUgGCGC------GUCGACgC-GCGCU- -5'
19080 3' -62.2 NC_004684.1 + 23912 0.67 0.376025
Target:  5'- gCUGCGC-CCGcCGCAccuGCUGC-CGCc- -3'
miRNA:   3'- gGACGCGuGGC-GCGU---CGACGcGCGcu -5'
19080 3' -62.2 NC_004684.1 + 23757 0.67 0.376025
Target:  5'- -gUGCGCAgUucgggccgugggGCGCGGCguUGgGCGCGAu -3'
miRNA:   3'- ggACGCGUgG------------CGCGUCG--ACgCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 45882 0.67 0.376025
Target:  5'- -gUGCGCGCCGUcCAcGCUgGCG-GCGAa -3'
miRNA:   3'- ggACGCGUGGCGcGU-CGA-CGCgCGCU- -5'
19080 3' -62.2 NC_004684.1 + 65753 0.67 0.376025
Target:  5'- gCCUcGCGggcguuggcCGCCGCGCgccGGUggGCGCGCGc -3'
miRNA:   3'- -GGA-CGC---------GUGGCGCG---UCGa-CGCGCGCu -5'
19080 3' -62.2 NC_004684.1 + 49039 0.67 0.371061
Target:  5'- --aGCgGCACCGCGCcgccggucGGCUccgggggcggcaccgGCGUGCGGa -3'
miRNA:   3'- ggaCG-CGUGGCGCG--------UCGA---------------CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 65305 0.67 0.367777
Target:  5'- gCUGCGcCACCaguuGCG-AGCUgGCGCGCu- -3'
miRNA:   3'- gGACGC-GUGG----CGCgUCGA-CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 65708 0.67 0.367776
Target:  5'- -aUGCGCGCCaGCuCGGCcugGUGgGCGAa -3'
miRNA:   3'- ggACGCGUGG-CGcGUCGa--CGCgCGCU- -5'
19080 3' -62.2 NC_004684.1 + 19857 0.67 0.367776
Target:  5'- gCC-GCGCACCGUGguGCagacaaCGCGCc- -3'
miRNA:   3'- -GGaCGCGUGGCGCguCGac----GCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 58521 0.67 0.358848
Target:  5'- uCCaGCGUGCCGUugGCGGCgGCGUuggagauGCGAg -3'
miRNA:   3'- -GGaCGCGUGGCG--CGUCGaCGCG-------CGCU- -5'
19080 3' -62.2 NC_004684.1 + 1617 0.67 0.351657
Target:  5'- gCCgUGCGCGCgcccaccggCGCGCGGCggccaacGCcCGCGAg -3'
miRNA:   3'- -GG-ACGCGUG---------GCGCGUCGa------CGcGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 21331 0.67 0.351657
Target:  5'- uCCUG-GUccaGCCGCGCGGCaagaccGUGCGCa- -3'
miRNA:   3'- -GGACgCG---UGGCGCGUCGa-----CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 55226 0.67 0.351656
Target:  5'- gUUG-GCACCGCGC-GCcaagGCGCuGCGGg -3'
miRNA:   3'- gGACgCGUGGCGCGuCGa---CGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 41056 0.67 0.343786
Target:  5'- gCCgaGCGCACCGCGuCGGCaaucgGCGgcccgGCGGc -3'
miRNA:   3'- -GGa-CGCGUGGCGC-GUCGa----CGCg----CGCU- -5'
19080 3' -62.2 NC_004684.1 + 62412 0.67 0.343786
Target:  5'- cCCUcGCGCugCGCcCAGgUGCGCagucCGAa -3'
miRNA:   3'- -GGA-CGCGugGCGcGUCgACGCGc---GCU- -5'
19080 3' -62.2 NC_004684.1 + 34073 0.67 0.343786
Target:  5'- aCCgGCG-ACCcugGCGCGGC-GgGCGCGAa -3'
miRNA:   3'- -GGaCGCgUGG---CGCGUCGaCgCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.