miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 5' -53.2 NC_004684.1 + 30957 0.67 0.797376
Target:  5'- cGCCAGCAGGgUcGUcgUCCACcACGa -3'
miRNA:   3'- aCGGUCGUUCgAcCAcaAGGUGuUGC- -5'
19080 5' -53.2 NC_004684.1 + 43446 0.67 0.777418
Target:  5'- gGCuCGGCAGGCgGGUGccgCGCAGCu -3'
miRNA:   3'- aCG-GUCGUUCGaCCACaagGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 55467 0.67 0.777418
Target:  5'- gGCCAGCGgacggcccuGGCUgucGGUGgugCCGCGcACGu -3'
miRNA:   3'- aCGGUCGU---------UCGA---CCACaa-GGUGU-UGC- -5'
19080 5' -53.2 NC_004684.1 + 2084 0.67 0.777417
Target:  5'- cGCCAGCucGCaacUGGUGg--CGCAGCa -3'
miRNA:   3'- aCGGUCGuuCG---ACCACaagGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 66618 0.67 0.777417
Target:  5'- gGCCAGCuuGGUgccugcggccuUGGUGg-CCACGAUGg -3'
miRNA:   3'- aCGGUCGu-UCG-----------ACCACaaGGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 22906 0.67 0.777417
Target:  5'- gUGCCAGCGacaaGGUgaccGG-GUUCCugGACc -3'
miRNA:   3'- -ACGGUCGU----UCGa---CCaCAAGGugUUGc -5'
19080 5' -53.2 NC_004684.1 + 7576 0.67 0.777417
Target:  5'- cGCUGGUGcGGCUGGUGcgCgGCAACc -3'
miRNA:   3'- aCGGUCGU-UCGACCACaaGgUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 46322 0.67 0.777417
Target:  5'- cGCCAGCGucuggaGGCUGGcGaa-CACGAUGg -3'
miRNA:   3'- aCGGUCGU------UCGACCaCaagGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 26834 0.68 0.756842
Target:  5'- -aCCAGCGcGCUGGUGgaCCGgucgagcacCAGCGa -3'
miRNA:   3'- acGGUCGUuCGACCACaaGGU---------GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 57125 0.68 0.756842
Target:  5'- cGCUGGCAgcacuggcgcGGCUGGUucgccUCCAUGGCGg -3'
miRNA:   3'- aCGGUCGU----------UCGACCAca---AGGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 62964 0.68 0.756842
Target:  5'- cGCCAGCAGGCccgcgcguUGUUCCgGCGGCc -3'
miRNA:   3'- aCGGUCGUUCGacc-----ACAAGG-UGUUGc -5'
19080 5' -53.2 NC_004684.1 + 65309 0.68 0.756842
Target:  5'- cGCCAccaguuGCGAGCUGGcgcGcUCCACcACGu -3'
miRNA:   3'- aCGGU------CGUUCGACCa--CaAGGUGuUGC- -5'
19080 5' -53.2 NC_004684.1 + 40568 0.68 0.746351
Target:  5'- -aCCAGCGcGCUGGUGUcgUUCAuCAACc -3'
miRNA:   3'- acGGUCGUuCGACCACA--AGGU-GUUGc -5'
19080 5' -53.2 NC_004684.1 + 22090 0.68 0.735742
Target:  5'- cGgCAGCGacggcuGGCUGGUGUUCCuguGGCc -3'
miRNA:   3'- aCgGUCGU------UCGACCACAAGGug-UUGc -5'
19080 5' -53.2 NC_004684.1 + 47098 0.68 0.735742
Target:  5'- gUGUCGGCGcacuucucGCUGGUGUcgaCCACAGgGg -3'
miRNA:   3'- -ACGGUCGUu-------CGACCACAa--GGUGUUgC- -5'
19080 5' -53.2 NC_004684.1 + 42637 0.68 0.725026
Target:  5'- cGCCGGU--GCUGGUGccgCCAgCGAUGa -3'
miRNA:   3'- aCGGUCGuuCGACCACaa-GGU-GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 49118 0.68 0.725026
Target:  5'- gUGCCAGCAGGCggccgGGcGUgccguugCCGuCGAUGg -3'
miRNA:   3'- -ACGGUCGUUCGa----CCaCAa------GGU-GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 35744 0.68 0.725026
Target:  5'- gUGCCAGCGucccGGCggggaUGGUGUagCGCGgACGg -3'
miRNA:   3'- -ACGGUCGU----UCG-----ACCACAagGUGU-UGC- -5'
19080 5' -53.2 NC_004684.1 + 52104 0.68 0.725026
Target:  5'- cGCCAGCcaaacgucGGGCUGGUGg-CCACcAgGg -3'
miRNA:   3'- aCGGUCG--------UUCGACCACaaGGUGuUgC- -5'
19080 5' -53.2 NC_004684.1 + 27381 0.68 0.725026
Target:  5'- cGCCGcuaacGCAGGCUGGUaagCCACcACa -3'
miRNA:   3'- aCGGU-----CGUUCGACCAcaaGGUGuUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.