miRNA display CGI


Results 1 - 20 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19082 3' -60.7 NC_004684.1 + 47051 0.66 0.529683
Target:  5'- uGACgGUGCaCCGGgcgaCGCCGAUCucgaUGGCCGc -3'
miRNA:   3'- gCUG-CACG-GGCC----GUGGCUGG----ACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 18908 0.66 0.529683
Target:  5'- uCGGCGggGUCgCGGCGCaucaGACCaGGCCc -3'
miRNA:   3'- -GCUGCa-CGG-GCCGUGg---CUGGaCUGGu -5'
19082 3' -60.7 NC_004684.1 + 32505 0.66 0.529683
Target:  5'- uGACcucaCUCGGCACCGuCCgGGCCAc -3'
miRNA:   3'- gCUGcac-GGGCCGUGGCuGGaCUGGU- -5'
19082 3' -60.7 NC_004684.1 + 51175 0.66 0.529683
Target:  5'- cCGAUGcGCCgGGCcauggACCGcgcgcCCUGGCCGu -3'
miRNA:   3'- -GCUGCaCGGgCCG-----UGGCu----GGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 33097 0.66 0.529683
Target:  5'- uGGCGcUGCCgacgcaGGCGCUcGCgCUGGCCAa -3'
miRNA:   3'- gCUGC-ACGGg-----CCGUGGcUG-GACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 9983 0.66 0.519686
Target:  5'- uCGACGcGCUCGGCAucCCGuugccggaacuGCCgGACCu -3'
miRNA:   3'- -GCUGCaCGGGCCGU--GGC-----------UGGaCUGGu -5'
19082 3' -60.7 NC_004684.1 + 30216 0.66 0.519686
Target:  5'- gCGuCGaUGCUCGGCG-CGACgUGGCCc -3'
miRNA:   3'- -GCuGC-ACGGGCCGUgGCUGgACUGGu -5'
19082 3' -60.7 NC_004684.1 + 43814 0.66 0.519686
Target:  5'- gCGGCGguguucgcgcgGCCCGGCagGCUGuCCaGGCCGc -3'
miRNA:   3'- -GCUGCa----------CGGGCCG--UGGCuGGaCUGGU- -5'
19082 3' -60.7 NC_004684.1 + 19201 0.66 0.519686
Target:  5'- -uGCGUGCCCGcGCGauaGCCUGAgCCGg -3'
miRNA:   3'- gcUGCACGGGC-CGUggcUGGACU-GGU- -5'
19082 3' -60.7 NC_004684.1 + 18048 0.66 0.519686
Target:  5'- gGGCcUGauCCCGucaGCGCCGACCaUGGCCGc -3'
miRNA:   3'- gCUGcAC--GGGC---CGUGGCUGG-ACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 513 0.66 0.519686
Target:  5'- cCGAagGUcGCcaCCGGCGCUGACgugCUGGCCAg -3'
miRNA:   3'- -GCUg-CA-CG--GGCCGUGGCUG---GACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 38400 0.66 0.519686
Target:  5'- cCGGCG-GCgUGGagACCGAgaaCCUGGCCGa -3'
miRNA:   3'- -GCUGCaCGgGCCg-UGGCU---GGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 50035 0.66 0.519686
Target:  5'- -aGCGUGgCCGGUGCCuGGCUccaGGCCAg -3'
miRNA:   3'- gcUGCACgGGCCGUGG-CUGGa--CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 57814 0.66 0.519686
Target:  5'- cCGACcacgGCCUGGUcCCGGCggugCUGGCCGc -3'
miRNA:   3'- -GCUGca--CGGGCCGuGGCUG----GACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 1233 0.66 0.517695
Target:  5'- uCGGCGgccuggucggucGCCCGGCcCCGGCCcagaugcgcUGGCUg -3'
miRNA:   3'- -GCUGCa-----------CGGGCCGuGGCUGG---------ACUGGu -5'
19082 3' -60.7 NC_004684.1 + 66820 0.66 0.513724
Target:  5'- uCGACGgugGCCuCGGCcuuguccuccucgguGgCGGCCUcGACCGc -3'
miRNA:   3'- -GCUGCa--CGG-GCCG---------------UgGCUGGA-CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 140 0.66 0.509765
Target:  5'- gCGACGccaGCCCGGaaaCGCCGgucgaACCggUGACCGg -3'
miRNA:   3'- -GCUGCa--CGGGCC---GUGGC-----UGG--ACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 18487 0.66 0.509765
Target:  5'- ---gGUGUCCGGCACCGccACCgcugGGCa- -3'
miRNA:   3'- gcugCACGGGCCGUGGC--UGGa---CUGgu -5'
19082 3' -60.7 NC_004684.1 + 34923 0.66 0.509765
Target:  5'- cCGACcgaaaacUGCCCGGCAagcuCCUGAUCAa -3'
miRNA:   3'- -GCUGc------ACGGGCCGUggcuGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 40836 0.66 0.509765
Target:  5'- gGGCGcGCCgGaacGCGuacaccCCGGCCUGACCGc -3'
miRNA:   3'- gCUGCaCGGgC---CGU------GGCUGGACUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.