miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19082 3' -60.7 NC_004684.1 + 26373 0.66 0.509765
Target:  5'- aCGGCaccgGCaacguCGGCGgCGAUCUGGCCAa -3'
miRNA:   3'- -GCUGca--CGg----GCCGUgGCUGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 10332 0.66 0.508777
Target:  5'- gGugGUGCCUGcCACCGcgcugguGCCgUGGCCc -3'
miRNA:   3'- gCugCACGGGCcGUGGC-------UGG-ACUGGu -5'
19082 3' -60.7 NC_004684.1 + 40398 0.66 0.508777
Target:  5'- uCGcCGcGCCCGccgcgcucGCACCGGCCUGgauggcggcguugGCCAc -3'
miRNA:   3'- -GCuGCaCGGGC--------CGUGGCUGGAC-------------UGGU- -5'
19082 3' -60.7 NC_004684.1 + 61300 0.66 0.505818
Target:  5'- aCGACGUuuacgaggccgccCCCGGCAUCGGCU--ACCAg -3'
miRNA:   3'- -GCUGCAc------------GGGCCGUGGCUGGacUGGU- -5'
19082 3' -60.7 NC_004684.1 + 32294 0.66 0.499924
Target:  5'- uGGC--GCUCGGCGCUGuGCCUGACg- -3'
miRNA:   3'- gCUGcaCGGGCCGUGGC-UGGACUGgu -5'
19082 3' -60.7 NC_004684.1 + 42746 0.66 0.499924
Target:  5'- gGACGUGgUUGGC---GGCCUGGCCGg -3'
miRNA:   3'- gCUGCACgGGCCGuggCUGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 16506 0.66 0.499924
Target:  5'- aCGACGaGCUgguggUGGaCACCGAUgUGGCCGc -3'
miRNA:   3'- -GCUGCaCGG-----GCC-GUGGCUGgACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 49331 0.66 0.499924
Target:  5'- uCGGCG-GCCaugguCGGCGCUGACggGAUCAg -3'
miRNA:   3'- -GCUGCaCGG-----GCCGUGGCUGgaCUGGU- -5'
19082 3' -60.7 NC_004684.1 + 54482 0.66 0.490167
Target:  5'- cCGACGgcGCaCCGGCACCG--CUGGCg- -3'
miRNA:   3'- -GCUGCa-CG-GGCCGUGGCugGACUGgu -5'
19082 3' -60.7 NC_004684.1 + 52892 0.66 0.490167
Target:  5'- -cACGUGCcaCCGGCgACCGGCgUGguACCGg -3'
miRNA:   3'- gcUGCACG--GGCCG-UGGCUGgAC--UGGU- -5'
19082 3' -60.7 NC_004684.1 + 63734 0.66 0.490167
Target:  5'- gGGUGUGCgcaUCGGUGCCGACCggcaUGACCc -3'
miRNA:   3'- gCUGCACG---GGCCGUGGCUGG----ACUGGu -5'
19082 3' -60.7 NC_004684.1 + 47428 0.66 0.490167
Target:  5'- ---gGUGCuCCGGCACC-ACCUGGUCGc -3'
miRNA:   3'- gcugCACG-GGCCGUGGcUGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 13020 0.66 0.490167
Target:  5'- cCGACGcGCCCGGUuacgUCG-CCgGGCCGg -3'
miRNA:   3'- -GCUGCaCGGGCCGu---GGCuGGaCUGGU- -5'
19082 3' -60.7 NC_004684.1 + 58002 0.66 0.489197
Target:  5'- aGGUGUGCCUGGCguacuucGCCGagGCC-GACCAu -3'
miRNA:   3'- gCUGCACGGGCCG-------UGGC--UGGaCUGGU- -5'
19082 3' -60.7 NC_004684.1 + 17046 0.66 0.480501
Target:  5'- cCGAUGccgaUGCCaaggaGGcCGCCcGCCUGGCCGg -3'
miRNA:   3'- -GCUGC----ACGGg----CC-GUGGcUGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 14465 0.66 0.479539
Target:  5'- -aGCGccUGCCUGGaaugcggccacgcCGCCGugCUGGCCGg -3'
miRNA:   3'- gcUGC--ACGGGCC-------------GUGGCugGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 58774 0.66 0.479539
Target:  5'- uCGGCgGUGCCgGuGCACCGGgCUuguucgaGGCCAc -3'
miRNA:   3'- -GCUG-CACGGgC-CGUGGCUgGA-------CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 9091 0.67 0.470928
Target:  5'- cCGACGagGCCCGuGaCGCguuCGACCguggGGCCAu -3'
miRNA:   3'- -GCUGCa-CGGGC-C-GUG---GCUGGa---CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 65461 0.67 0.470928
Target:  5'- --cCGUGCgCCGGUACCaGGCCcggcaGGCCGg -3'
miRNA:   3'- gcuGCACG-GGCCGUGG-CUGGa----CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 60700 0.67 0.470928
Target:  5'- cCGACGgugGCCaGGU--CGACCUGugCAg -3'
miRNA:   3'- -GCUGCa--CGGgCCGugGCUGGACugGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.