miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19082 3' -60.7 NC_004684.1 + 140 0.66 0.509765
Target:  5'- gCGACGccaGCCCGGaaaCGCCGgucgaACCggUGACCGg -3'
miRNA:   3'- -GCUGCa--CGGGCC---GUGGC-----UGG--ACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 365 0.67 0.424602
Target:  5'- uGAUG-GCCauGCG-CGACCUGGCCGa -3'
miRNA:   3'- gCUGCaCGGgcCGUgGCUGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 513 0.66 0.519686
Target:  5'- cCGAagGUcGCcaCCGGCGCUGACgugCUGGCCAg -3'
miRNA:   3'- -GCUg-CA-CG--GGCCGUGGCUG---GACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 1143 0.69 0.364562
Target:  5'- aCGGCaUGCCgGGCguGCCGACC-GugCAc -3'
miRNA:   3'- -GCUGcACGGgCCG--UGGCUGGaCugGU- -5'
19082 3' -60.7 NC_004684.1 + 1233 0.66 0.517695
Target:  5'- uCGGCGgccuggucggucGCCCGGCcCCGGCCcagaugcgcUGGCUg -3'
miRNA:   3'- -GCUGCa-----------CGGGCCGuGGCUGG---------ACUGGu -5'
19082 3' -60.7 NC_004684.1 + 1478 0.8 0.05908
Target:  5'- gGACGUGCCCGGUGCggCGGCCcuggUGGCCAa -3'
miRNA:   3'- gCUGCACGGGCCGUG--GCUGG----ACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 2064 0.74 0.163346
Target:  5'- uCGugGccUGCCUGGCGCUGGCCgugGugCAc -3'
miRNA:   3'- -GCugC--ACGGGCCGUGGCUGGa--CugGU- -5'
19082 3' -60.7 NC_004684.1 + 2401 0.71 0.263028
Target:  5'- gCGGCGUGCacgucgUGGCACCGuuCCaGACCGg -3'
miRNA:   3'- -GCUGCACGg-----GCCGUGGCu-GGaCUGGU- -5'
19082 3' -60.7 NC_004684.1 + 2459 0.71 0.269451
Target:  5'- gGGCGgccaGCUCGGCguGCCGuaccACCUGACCu -3'
miRNA:   3'- gCUGCa---CGGGCCG--UGGC----UGGACUGGu -5'
19082 3' -60.7 NC_004684.1 + 2636 0.68 0.389566
Target:  5'- cCGAC--GCCUGGCACCaGCUcGGCCAg -3'
miRNA:   3'- -GCUGcaCGGGCCGUGGcUGGaCUGGU- -5'
19082 3' -60.7 NC_004684.1 + 2686 0.69 0.364562
Target:  5'- -----cGCCgGGCACCGcauccccgGCCUGGCCGg -3'
miRNA:   3'- gcugcaCGGgCCGUGGC--------UGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 2928 0.68 0.389566
Target:  5'- uCGAgGUGCcuCCGGUGCCGAgcaCCgaGGCCAu -3'
miRNA:   3'- -GCUgCACG--GGCCGUGGCU---GGa-CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 3672 0.69 0.364562
Target:  5'- uCGuACGgugGCCCGGCACCG-CCUc-CCGc -3'
miRNA:   3'- -GC-UGCa--CGGGCCGUGGCuGGAcuGGU- -5'
19082 3' -60.7 NC_004684.1 + 3829 0.72 0.227079
Target:  5'- gGGCGcGUUCGGCguGCCGACCgacGACCAc -3'
miRNA:   3'- gCUGCaCGGGCCG--UGGCUGGa--CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 4894 0.68 0.398147
Target:  5'- aGGCG-GCCUGGUcgccACCGGCCUcGGCg- -3'
miRNA:   3'- gCUGCaCGGGCCG----UGGCUGGA-CUGgu -5'
19082 3' -60.7 NC_004684.1 + 4996 0.68 0.406848
Target:  5'- gCGAgGgcaaggGCCCGGUGCCGcuCCUGAUgGa -3'
miRNA:   3'- -GCUgCa-----CGGGCCGUGGCu-GGACUGgU- -5'
19082 3' -60.7 NC_004684.1 + 5682 0.7 0.289478
Target:  5'- gGAgGUGgCCGGgGcCCGGCCUGcCCAc -3'
miRNA:   3'- gCUgCACgGGCCgU-GGCUGGACuGGU- -5'
19082 3' -60.7 NC_004684.1 + 5858 0.72 0.221508
Target:  5'- aGGCGUGCgaCUGGCagGCCGggcagcaccaGCCUGACCGg -3'
miRNA:   3'- gCUGCACG--GGCCG--UGGC----------UGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 6081 0.71 0.276
Target:  5'- gCGGCG-GCCCGGCGgCgGugCUG-CCGg -3'
miRNA:   3'- -GCUGCaCGGGCCGU-GgCugGACuGGU- -5'
19082 3' -60.7 NC_004684.1 + 6186 0.68 0.377758
Target:  5'- cCGACGcgaacgGCCagguguacgccgaGGCcaccaaccccGCCGACCUGGCCGg -3'
miRNA:   3'- -GCUGCa-----CGGg------------CCG----------UGGCUGGACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.