miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19082 3' -60.7 NC_004684.1 + 20340 0.71 0.269451
Target:  5'- uCGGCGUcGCCCGGUgcACCGucACCgcgcaGGCCAc -3'
miRNA:   3'- -GCUGCA-CGGGCCG--UGGC--UGGa----CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 60733 0.72 0.221508
Target:  5'- aGAgGUGCCCGGCgACCGGg-UGGCCGc -3'
miRNA:   3'- gCUgCACGGGCCG-UGGCUggACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 5858 0.72 0.221508
Target:  5'- aGGCGUGCgaCUGGCagGCCGggcagcaccaGCCUGACCGg -3'
miRNA:   3'- gCUGCACG--GGCCG--UGGC----------UGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 13844 0.72 0.221508
Target:  5'- uCGugGUuCuCCGaggucauccGCGCCGACCUGGCCAu -3'
miRNA:   3'- -GCugCAcG-GGC---------CGUGGCUGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 3829 0.72 0.227079
Target:  5'- gGGCGcGUUCGGCguGCCGACCgacGACCAc -3'
miRNA:   3'- gCUGCaCGGGCCG--UGGCUGGa--CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 33829 0.71 0.25673
Target:  5'- gCGGUGUGCCCGGCGgCGGCggcaacggGGCCAa -3'
miRNA:   3'- -GCUGCACGGGCCGUgGCUGga------CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 66658 0.71 0.25673
Target:  5'- uCGGCGgcgGCCCGGuCACCGGCggUGcCCAg -3'
miRNA:   3'- -GCUGCa--CGGGCC-GUGGCUGg-ACuGGU- -5'
19082 3' -60.7 NC_004684.1 + 2401 0.71 0.263028
Target:  5'- gCGGCGUGCacgucgUGGCACCGuuCCaGACCGg -3'
miRNA:   3'- -GCUGCACGg-----GCCGUGGCu-GGaCUGGU- -5'
19082 3' -60.7 NC_004684.1 + 11777 0.71 0.269451
Target:  5'- uGugGUGgcCCCGuGgGCCGACCaGGCCAc -3'
miRNA:   3'- gCugCAC--GGGC-CgUGGCUGGaCUGGU- -5'
19082 3' -60.7 NC_004684.1 + 34293 0.72 0.215515
Target:  5'- gCGGCGUGUCCGGCGacaucauCCGACUgucgGGCUu -3'
miRNA:   3'- -GCUGCACGGGCCGU-------GGCUGGa---CUGGu -5'
19082 3' -60.7 NC_004684.1 + 30048 0.72 0.210716
Target:  5'- gGGCGauccugugaGCCUGGUACCGGCCUcccGGCCAc -3'
miRNA:   3'- gCUGCa--------CGGGCCGUGGCUGGA---CUGGU- -5'
19082 3' -60.7 NC_004684.1 + 36264 0.72 0.205491
Target:  5'- uGAgGUGUCCGGC---GGCCUGGCCAa -3'
miRNA:   3'- gCUgCACGGGCCGuggCUGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 13329 0.78 0.079756
Target:  5'- gCGACGUG-CCGGacccgACCGACCUGAUCAg -3'
miRNA:   3'- -GCUGCACgGGCCg----UGGCUGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 18061 0.78 0.081947
Target:  5'- gGACGacUGCCCGGUGCCGACCacgGACUc -3'
miRNA:   3'- gCUGC--ACGGGCCGUGGCUGGa--CUGGu -5'
19082 3' -60.7 NC_004684.1 + 40128 0.77 0.104415
Target:  5'- uGGCG-GCCuCGGCACCGACCUcGGCg- -3'
miRNA:   3'- gCUGCaCGG-GCCGUGGCUGGA-CUGgu -5'
19082 3' -60.7 NC_004684.1 + 29659 0.76 0.122492
Target:  5'- aCGACGUGCuCCuGCGCgCGGCC-GACCAg -3'
miRNA:   3'- -GCUGCACG-GGcCGUG-GCUGGaCUGGU- -5'
19082 3' -60.7 NC_004684.1 + 37583 0.75 0.14344
Target:  5'- gGAgGUGCCCGGCAUCGguACCgugcgGGCCc -3'
miRNA:   3'- gCUgCACGGGCCGUGGC--UGGa----CUGGu -5'
19082 3' -60.7 NC_004684.1 + 67008 0.74 0.159176
Target:  5'- aCGGCgGUGauccugaCCGGCACCacgauGGCCUGGCCAc -3'
miRNA:   3'- -GCUG-CACg------GGCCGUGG-----CUGGACUGGU- -5'
19082 3' -60.7 NC_004684.1 + 18414 0.73 0.190003
Target:  5'- uCGGCG-GCCCGGCgggcgcaccggcgGCCGACgUGGCUc -3'
miRNA:   3'- -GCUGCaCGGGCCG-------------UGGCUGgACUGGu -5'
19082 3' -60.7 NC_004684.1 + 27143 0.73 0.190487
Target:  5'- uCGACGUGCUgGGCgauucgaucACCagcuacggcggcGACCUGGCCAc -3'
miRNA:   3'- -GCUGCACGGgCCG---------UGG------------CUGGACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.