miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19082 5' -56.2 NC_004684.1 + 41594 0.66 0.712377
Target:  5'- -cCGGCCAguuGGUGaCGAacaccGGCGUGCcgccgGUGg -3'
miRNA:   3'- uaGCUGGU---UCAC-GCU-----CCGCACGa----CAC- -5'
19082 5' -56.2 NC_004684.1 + 62602 0.66 0.712377
Target:  5'- gGUCGGCCAccgcGcCGAGGCGcuUGCUGg- -3'
miRNA:   3'- -UAGCUGGUuca-C-GCUCCGC--ACGACac -5'
19082 5' -56.2 NC_004684.1 + 3760 0.66 0.712377
Target:  5'- uUCGACCAGGaccGCGAacaGGCGaaGCUGaUGg -3'
miRNA:   3'- uAGCUGGUUCa--CGCU---CCGCa-CGAC-AC- -5'
19082 5' -56.2 NC_004684.1 + 50644 0.66 0.669269
Target:  5'- aGUCGACaccgccgucggGGGUGCGgaccAGGCGUGCgcccgGUGc -3'
miRNA:   3'- -UAGCUGg----------UUCACGC----UCCGCACGa----CAC- -5'
19082 5' -56.2 NC_004684.1 + 33873 0.67 0.60377
Target:  5'- uUCGGCCuaccaggcGGUGCG-GGCgGUGCcgGUGg -3'
miRNA:   3'- uAGCUGGu-------UCACGCuCCG-CACGa-CAC- -5'
19082 5' -56.2 NC_004684.1 + 5035 0.68 0.560451
Target:  5'- -aCGACgAGGUGCGcaggcuGGCGcgcGCUGUGc -3'
miRNA:   3'- uaGCUGgUUCACGCu-----CCGCa--CGACAC- -5'
19082 5' -56.2 NC_004684.1 + 16784 0.68 0.549744
Target:  5'- --gGACCAGGUGCGGcGCGUcgUGUGg -3'
miRNA:   3'- uagCUGGUUCACGCUcCGCAcgACAC- -5'
19082 5' -56.2 NC_004684.1 + 8676 0.68 0.549744
Target:  5'- -gCGGCCAGGUGCcuguGGCcGUGC-GUGa -3'
miRNA:   3'- uaGCUGGUUCACGcu--CCG-CACGaCAC- -5'
19082 5' -56.2 NC_004684.1 + 62725 0.69 0.528529
Target:  5'- aGUCGGCCAcaucgucgugGGUGCuGGGaCGUGCcaugGUGg -3'
miRNA:   3'- -UAGCUGGU----------UCACGcUCC-GCACGa---CAC- -5'
19082 5' -56.2 NC_004684.1 + 63908 0.69 0.487078
Target:  5'- -gCGGCCAcGGUGCGGcccGGCGUGgCUGa- -3'
miRNA:   3'- uaGCUGGU-UCACGCU---CCGCAC-GACac -5'
19082 5' -56.2 NC_004684.1 + 39178 0.71 0.409254
Target:  5'- -gCGGCCAGGUaGCGcAGGCuggcgGUGCUGUc -3'
miRNA:   3'- uaGCUGGUUCA-CGC-UCCG-----CACGACAc -5'
19082 5' -56.2 NC_004684.1 + 5770 0.71 0.409254
Target:  5'- uUCGAcuggcCCAAGUGCGuGGUGUGCgGg- -3'
miRNA:   3'- uAGCU-----GGUUCACGCuCCGCACGaCac -5'
19082 5' -56.2 NC_004684.1 + 5250 0.72 0.356227
Target:  5'- --aGGCCGGGcacgGCGAGGCGUGCa--- -3'
miRNA:   3'- uagCUGGUUCa---CGCUCCGCACGacac -5'
19082 5' -56.2 NC_004684.1 + 60956 0.72 0.342927
Target:  5'- cUCGGCCAAGcGCGaAGGCGUucacgccgccgccgaGCUGUa -3'
miRNA:   3'- uAGCUGGUUCaCGC-UCCGCA---------------CGACAc -5'
19082 5' -56.2 NC_004684.1 + 14806 1.07 0.0013
Target:  5'- cAUCGACCAAGUGCGAGGCGUGCUGUGa -3'
miRNA:   3'- -UAGCUGGUUCACGCUCCGCACGACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.