miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 3' -60.1 NC_004684.1 + 16443 0.66 0.506287
Target:  5'- -uGGCGCacaccauCGuGCGccUGGaCGAGGCCg -3'
miRNA:   3'- ugUCGCGgau----GCuCGC--ACC-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 3337 0.66 0.506287
Target:  5'- -aGGCGCUcaACGAG-GUGuuCGAGGCCg -3'
miRNA:   3'- ugUCGCGGa-UGCUCgCACc-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 16491 0.66 0.506287
Target:  5'- uGCAGCugGCCaugcacgACGAGCugGUGGUGGacaccgauguGGCCg -3'
miRNA:   3'- -UGUCG--CGGa------UGCUCG--CACCGCU----------CCGG- -5'
19083 3' -60.1 NC_004684.1 + 37316 0.66 0.506287
Target:  5'- uCGGCGUCggUGAGUGgccGG-GAGGCCg -3'
miRNA:   3'- uGUCGCGGauGCUCGCa--CCgCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 22178 0.66 0.506287
Target:  5'- -aAGCGCCgcauggACgcgcugccgcugGAGCGcGGCGGGGUg -3'
miRNA:   3'- ugUCGCGGa-----UG------------CUCGCaCCGCUCCGg -5'
19083 3' -60.1 NC_004684.1 + 48950 0.66 0.506287
Target:  5'- aACGGCacGUCgGCGGGCGgggUGGCcGGGGCg -3'
miRNA:   3'- -UGUCG--CGGaUGCUCGC---ACCG-CUCCGg -5'
19083 3' -60.1 NC_004684.1 + 39252 0.66 0.506287
Target:  5'- gUAGUugagGCCUGCGuGCGUG-C-AGGCCa -3'
miRNA:   3'- uGUCG----CGGAUGCuCGCACcGcUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 3147 0.66 0.496354
Target:  5'- --uGCGCCaACacccAGCGccUGGcCGAGGCCa -3'
miRNA:   3'- uguCGCGGaUGc---UCGC--ACC-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 18097 0.66 0.496354
Target:  5'- gACGGCaagGCCacCGAGC---GCGAGGCCg -3'
miRNA:   3'- -UGUCG---CGGauGCUCGcacCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 67067 0.66 0.496354
Target:  5'- --cGCGCCguacccggUGCGGGCGuUGGCcucGGcGGCCa -3'
miRNA:   3'- uguCGCGG--------AUGCUCGC-ACCG---CU-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 19774 0.66 0.496354
Target:  5'- cCGGUGCCcGCcggGGGCGacaagaUGGCG-GGCCu -3'
miRNA:   3'- uGUCGCGGaUG---CUCGC------ACCGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 62649 0.66 0.48651
Target:  5'- cGCGGCaCUUGCGgcuguGGcCGUGcGCGAGGUCc -3'
miRNA:   3'- -UGUCGcGGAUGC-----UC-GCAC-CGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 54822 0.66 0.48651
Target:  5'- gAUAGcCGCCUGCGccuGaCGU-GCGAGcGCCu -3'
miRNA:   3'- -UGUC-GCGGAUGCu--C-GCAcCGCUC-CGG- -5'
19083 3' -60.1 NC_004684.1 + 49772 0.66 0.48651
Target:  5'- -gAGCGCCagUACGGGUuc--CGAGGCCg -3'
miRNA:   3'- ugUCGCGG--AUGCUCGcaccGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 44782 0.66 0.48651
Target:  5'- cACAGCGCCguaACG-GCcucacCGAGGCCu -3'
miRNA:   3'- -UGUCGCGGa--UGCuCGcacc-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 339 0.66 0.48651
Target:  5'- uACGGCGCgaaGCGuGCGcagcagcucggUGGCcAGGCCa -3'
miRNA:   3'- -UGUCGCGga-UGCuCGC-----------ACCGcUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 21539 0.66 0.48651
Target:  5'- cGCcGaCGCCaucaACGAGCGcGGCaugaccgccGAGGCCg -3'
miRNA:   3'- -UGuC-GCGGa---UGCUCGCaCCG---------CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 65433 0.66 0.48651
Target:  5'- cGCuGCGCUgGCGuGCG-GcGCGcGGCCa -3'
miRNA:   3'- -UGuCGCGGaUGCuCGCaC-CGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 53884 0.66 0.48553
Target:  5'- uGCGGUGCCUucucgUGGGgGUGGUugugacgGGGGUCa -3'
miRNA:   3'- -UGUCGCGGAu----GCUCgCACCG-------CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 40095 0.67 0.47773
Target:  5'- cGCAGCgGCCgaucucguggccguaGCGGGCGcUGGCGGccucGGCa -3'
miRNA:   3'- -UGUCG-CGGa--------------UGCUCGC-ACCGCU----CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.