miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19086 3' -57.6 NC_004684.1 + 8936 0.66 0.667018
Target:  5'- cGCuGGCCUcaGcGGGCAGUcggGUCCGGCa -3'
miRNA:   3'- cCGuCUGGA--C-CUCGUCAa--CGGGCUGc -5'
19086 3' -57.6 NC_004684.1 + 42716 0.66 0.667018
Target:  5'- cGGCAGGCCUGGAaccuCAcc-GCCguCGGCGa -3'
miRNA:   3'- -CCGUCUGGACCUc---GUcaaCGG--GCUGC- -5'
19086 3' -57.6 NC_004684.1 + 52425 0.66 0.660636
Target:  5'- cGGUccAGGCCgGGGGUcucgauGUcggccgccaccgggaUGCCCGACGg -3'
miRNA:   3'- -CCG--UCUGGaCCUCGu-----CA---------------ACGGGCUGC- -5'
19086 3' -57.6 NC_004684.1 + 54286 0.66 0.656375
Target:  5'- cGCuGGCCggUGGGGCGGcgUGCaCCGcGCGa -3'
miRNA:   3'- cCGuCUGG--ACCUCGUCa-ACG-GGC-UGC- -5'
19086 3' -57.6 NC_004684.1 + 33884 0.66 0.656375
Target:  5'- aGGCGGugC-GG-GCGG-UGCCgGugGg -3'
miRNA:   3'- -CCGUCugGaCCuCGUCaACGGgCugC- -5'
19086 3' -57.6 NC_004684.1 + 66282 0.66 0.656375
Target:  5'- aGCGGAC--GGccacguuGCGGgUGCCCGACGg -3'
miRNA:   3'- cCGUCUGgaCCu------CGUCaACGGGCUGC- -5'
19086 3' -57.6 NC_004684.1 + 19601 0.66 0.656375
Target:  5'- cGGCGG-CCgaGGugcuGGCGGUgacGCUCGGCGa -3'
miRNA:   3'- -CCGUCuGGa-CC----UCGUCAa--CGGGCUGC- -5'
19086 3' -57.6 NC_004684.1 + 27746 0.66 0.645711
Target:  5'- aGGcCGGuACCUGGAGguGaccgUGCCgCG-CGa -3'
miRNA:   3'- -CC-GUC-UGGACCUCguCa---ACGG-GCuGC- -5'
19086 3' -57.6 NC_004684.1 + 18397 0.66 0.645711
Target:  5'- gGGCAcGACCUacuacuucggcGGcccGGCGGgcGCaCCGGCGg -3'
miRNA:   3'- -CCGU-CUGGA-----------CC---UCGUCaaCG-GGCUGC- -5'
19086 3' -57.6 NC_004684.1 + 4230 0.66 0.635034
Target:  5'- cGGCGcgcaACCUGGuucGgAGUcugagccggUGCCCGGCGg -3'
miRNA:   3'- -CCGUc---UGGACCu--CgUCA---------ACGGGCUGC- -5'
19086 3' -57.6 NC_004684.1 + 18466 0.66 0.635034
Target:  5'- cGGCAccGAgCUGGuGCuGUcggUGUCCGGCa -3'
miRNA:   3'- -CCGU--CUgGACCuCGuCA---ACGGGCUGc -5'
19086 3' -57.6 NC_004684.1 + 46494 0.66 0.635034
Target:  5'- cGGUAGGCgUUGGAGgcCAGcUUGCCgaUGACGg -3'
miRNA:   3'- -CCGUCUG-GACCUC--GUC-AACGG--GCUGC- -5'
19086 3' -57.6 NC_004684.1 + 58734 0.66 0.635034
Target:  5'- aGCAGcuCCUGGAGCuGcUGUaCGGCGg -3'
miRNA:   3'- cCGUCu-GGACCUCGuCaACGgGCUGC- -5'
19086 3' -57.6 NC_004684.1 + 46121 0.67 0.613683
Target:  5'- gGGCGcgcGugCcGGGGUGGUUGaCCUGGCGc -3'
miRNA:   3'- -CCGU---CugGaCCUCGUCAAC-GGGCUGC- -5'
19086 3' -57.6 NC_004684.1 + 48968 0.67 0.603026
Target:  5'- gGGguGGCC-GGGGCGGgcgcgucggUGCCCuGCu -3'
miRNA:   3'- -CCguCUGGaCCUCGUCa--------ACGGGcUGc -5'
19086 3' -57.6 NC_004684.1 + 57832 0.67 0.603026
Target:  5'- cGGCGGugCUGGccgcCGGUacccGCCCGAUu -3'
miRNA:   3'- -CCGUCugGACCuc--GUCAa---CGGGCUGc -5'
19086 3' -57.6 NC_004684.1 + 33817 0.67 0.603026
Target:  5'- cGGCG--UCgGcGGGCGGUgUGCCCGGCGg -3'
miRNA:   3'- -CCGUcuGGaC-CUCGUCA-ACGGGCUGC- -5'
19086 3' -57.6 NC_004684.1 + 55341 0.67 0.599833
Target:  5'- uGGCAGgugaGCCUGGcgcgcaugcaguacAGCAGUgacaagcugGCCCGGa- -3'
miRNA:   3'- -CCGUC----UGGACC--------------UCGUCAa--------CGGGCUgc -5'
19086 3' -57.6 NC_004684.1 + 61096 0.67 0.58179
Target:  5'- uGGUGGACCUGGAcCAGgagcugGCCagcuaCGACa -3'
miRNA:   3'- -CCGUCUGGACCUcGUCaa----CGG-----GCUGc -5'
19086 3' -57.6 NC_004684.1 + 34272 0.67 0.579674
Target:  5'- cGCAGGCCaccgucagcaaGGGCGGcgUGUCCGGCGa -3'
miRNA:   3'- cCGUCUGGac---------CUCGUCa-ACGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.