miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19086 5' -58 NC_004684.1 + 66638 0.66 0.620923
Target:  5'- gGUguCCaGGAG-CGCcgCCAGGGCGu -3'
miRNA:   3'- -UAguGGaCCUUgGCGuaGGUCCCGCu -5'
19086 5' -58 NC_004684.1 + 36520 0.66 0.610157
Target:  5'- --aGCCUGGGcACgGCGUUCGGGaucaGCGAg -3'
miRNA:   3'- uagUGGACCU-UGgCGUAGGUCC----CGCU- -5'
19086 5' -58 NC_004684.1 + 46438 0.66 0.599409
Target:  5'- -gCAUCUGGAACagcaguucggCGCGgugggCCAGGGCc- -3'
miRNA:   3'- uaGUGGACCUUG----------GCGUa----GGUCCCGcu -5'
19086 5' -58 NC_004684.1 + 2685 0.66 0.599409
Target:  5'- -gCGCCgGGcACCGCAUCCccGGCc- -3'
miRNA:   3'- uaGUGGaCCuUGGCGUAGGucCCGcu -5'
19086 5' -58 NC_004684.1 + 19742 0.66 0.592972
Target:  5'- -gCACCUGGAGCgugcaguaccugCGCggCCugccggugcccgccgGGGGCGAc -3'
miRNA:   3'- uaGUGGACCUUG------------GCGuaGG---------------UCCCGCU- -5'
19086 5' -58 NC_004684.1 + 63277 0.66 0.588688
Target:  5'- --gACCUGGAGCCGCc----GGGCGu -3'
miRNA:   3'- uagUGGACCUUGGCGuagguCCCGCu -5'
19086 5' -58 NC_004684.1 + 51204 0.66 0.578001
Target:  5'- cAUCACCgGGuuauuucuuGAgCGCGUCCAGGacaGCGGc -3'
miRNA:   3'- -UAGUGGaCC---------UUgGCGUAGGUCC---CGCU- -5'
19086 5' -58 NC_004684.1 + 18862 0.67 0.546229
Target:  5'- gGUgACCgGGuGGCCGCAcUCAGGGCa- -3'
miRNA:   3'- -UAgUGGaCC-UUGGCGUaGGUCCCGcu -5'
19086 5' -58 NC_004684.1 + 4982 0.67 0.535758
Target:  5'- -gCACCUGGGGCaGCG-CgAGGGCa- -3'
miRNA:   3'- uaGUGGACCUUGgCGUaGgUCCCGcu -5'
19086 5' -58 NC_004684.1 + 34221 0.67 0.535758
Target:  5'- gAUCACUgugGGAcACCGCcgggCCAacGGGCGGc -3'
miRNA:   3'- -UAGUGGa--CCU-UGGCGua--GGU--CCCGCU- -5'
19086 5' -58 NC_004684.1 + 16756 0.67 0.529509
Target:  5'- cUgGCCUGGAACuCGCGgggaugagcggggaCCAGGuGCGGc -3'
miRNA:   3'- uAgUGGACCUUG-GCGUa-------------GGUCC-CGCU- -5'
19086 5' -58 NC_004684.1 + 53202 0.67 0.525358
Target:  5'- cUgGCCaGGAA-UGCGUCCAGGGUGc -3'
miRNA:   3'- uAgUGGaCCUUgGCGUAGGUCCCGCu -5'
19086 5' -58 NC_004684.1 + 8172 0.67 0.525358
Target:  5'- gAUCGCCgGGGGCgCGCugggCCAGGcGCa- -3'
miRNA:   3'- -UAGUGGaCCUUG-GCGua--GGUCC-CGcu -5'
19086 5' -58 NC_004684.1 + 23324 0.67 0.504797
Target:  5'- cGUCACCaccgGcGAGCUGUA-CCuGGGCGAc -3'
miRNA:   3'- -UAGUGGa---C-CUUGGCGUaGGuCCCGCU- -5'
19086 5' -58 NC_004684.1 + 37331 0.68 0.494646
Target:  5'- -cUACCUGGAaagcccGCCGCAaCCGaccGGCGAg -3'
miRNA:   3'- uaGUGGACCU------UGGCGUaGGUc--CCGCU- -5'
19086 5' -58 NC_004684.1 + 6859 0.68 0.455031
Target:  5'- -aCGCCgUGGugguGCUGCAcuggcUCUGGGGCGAg -3'
miRNA:   3'- uaGUGG-ACCu---UGGCGU-----AGGUCCCGCU- -5'
19086 5' -58 NC_004684.1 + 66347 0.68 0.455031
Target:  5'- -aCGCC-GGGGCgGgCggCCAGGGCGAc -3'
miRNA:   3'- uaGUGGaCCUUGgC-GuaGGUCCCGCU- -5'
19086 5' -58 NC_004684.1 + 6051 0.68 0.453095
Target:  5'- uUCACCUGGccgccaccuaCGCcgCCgAGGGCGGc -3'
miRNA:   3'- uAGUGGACCuug-------GCGuaGG-UCCCGCU- -5'
19086 5' -58 NC_004684.1 + 62185 0.68 0.446354
Target:  5'- cUCACCUGGAGCacggucgagCGCGUCCuugauccccucuucGGCGAu -3'
miRNA:   3'- uAGUGGACCUUG---------GCGUAGGuc------------CCGCU- -5'
19086 5' -58 NC_004684.1 + 22121 0.68 0.445396
Target:  5'- -gCGCCUGGcAGCucagCGCGUCCAGcGCGGc -3'
miRNA:   3'- uaGUGGACC-UUG----GCGUAGGUCcCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.