miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19086 5' -58 NC_004684.1 + 14018 1.06 0.000964
Target:  5'- cAUCACCUGGAACCGCAUCCAGGGCGAc -3'
miRNA:   3'- -UAGUGGACCUUGGCGUAGGUCCCGCU- -5'
19086 5' -58 NC_004684.1 + 31270 0.79 0.096651
Target:  5'- -aCACCUGGAACCGCAUCgucGGCGGc -3'
miRNA:   3'- uaGUGGACCUUGGCGUAGgucCCGCU- -5'
19086 5' -58 NC_004684.1 + 3224 0.78 0.107995
Target:  5'- -gCGCCUGGAagaggugcGCCGCAUCCuGGGCc- -3'
miRNA:   3'- uaGUGGACCU--------UGGCGUAGGuCCCGcu -5'
19086 5' -58 NC_004684.1 + 34489 0.77 0.130899
Target:  5'- cGUCGCCgaGGucAACCGCGUCgAGGGUGAg -3'
miRNA:   3'- -UAGUGGa-CC--UUGGCGUAGgUCCCGCU- -5'
19086 5' -58 NC_004684.1 + 53285 0.76 0.162514
Target:  5'- uUCACCUGGAGCUGC-UCCuuGGGGUa- -3'
miRNA:   3'- uAGUGGACCUUGGCGuAGG--UCCCGcu -5'
19086 5' -58 NC_004684.1 + 3395 0.73 0.228607
Target:  5'- -gCGCCUGGAGaCCGCcgCCAaGGUGAu -3'
miRNA:   3'- uaGUGGACCUU-GGCGuaGGUcCCGCU- -5'
19086 5' -58 NC_004684.1 + 32039 0.72 0.259555
Target:  5'- -aCAgCUGGcACCGCGUCCAcuuGGCGAa -3'
miRNA:   3'- uaGUgGACCuUGGCGUAGGUc--CCGCU- -5'
19086 5' -58 NC_004684.1 + 53368 0.71 0.31605
Target:  5'- gGUCGcCCUGGAugCGguUCCA-GGUGAu -3'
miRNA:   3'- -UAGU-GGACCUugGCguAGGUcCCGCU- -5'
19086 5' -58 NC_004684.1 + 2487 0.71 0.323731
Target:  5'- cUgACCUGGAGCUGCuaUgAGGGCGGc -3'
miRNA:   3'- uAgUGGACCUUGGCGuaGgUCCCGCU- -5'
19086 5' -58 NC_004684.1 + 16351 0.71 0.334716
Target:  5'- cGUCACCggcGGuGGCCGCAUCCugccgguggaccagcAGGGCa- -3'
miRNA:   3'- -UAGUGGa--CC-UUGGCGUAGG---------------UCCCGcu -5'
19086 5' -58 NC_004684.1 + 22160 0.71 0.339507
Target:  5'- cAUCACCgaGGAgcACCGCAgggCCAcGGCGGc -3'
miRNA:   3'- -UAGUGGa-CCU--UGGCGUa--GGUcCCGCU- -5'
19086 5' -58 NC_004684.1 + 22626 0.7 0.347601
Target:  5'- -gCGCUgugGGAgGCCGCcgCCAGcGGCGAc -3'
miRNA:   3'- uaGUGGa--CCU-UGGCGuaGGUC-CCGCU- -5'
19086 5' -58 NC_004684.1 + 3027 0.7 0.38134
Target:  5'- gAUCACCgaGGGGCCGCAcaacgaggCCcGGGUGGu -3'
miRNA:   3'- -UAGUGGa-CCUUGGCGUa-------GGuCCCGCU- -5'
19086 5' -58 NC_004684.1 + 4500 0.7 0.384832
Target:  5'- -cCGCCgUGGcAACgGCAuggccgggauccuguUCCGGGGCGAg -3'
miRNA:   3'- uaGUGG-ACC-UUGgCGU---------------AGGUCCCGCU- -5'
19086 5' -58 NC_004684.1 + 26090 0.7 0.390109
Target:  5'- -cCAUCUGGAAgUGCAucgagUCCuuGGGCGAg -3'
miRNA:   3'- uaGUGGACCUUgGCGU-----AGGu-CCCGCU- -5'
19086 5' -58 NC_004684.1 + 6615 0.69 0.399009
Target:  5'- cUCACC-GGAACCgGCcuggCCAGGGCc- -3'
miRNA:   3'- uAGUGGaCCUUGG-CGua--GGUCCCGcu -5'
19086 5' -58 NC_004684.1 + 15647 0.69 0.417194
Target:  5'- -gCGCCUGGAgcacGCCGCAUUCcuGGCc- -3'
miRNA:   3'- uaGUGGACCU----UGGCGUAGGucCCGcu -5'
19086 5' -58 NC_004684.1 + 59375 0.69 0.435876
Target:  5'- gGUguCCUGGAACCGC--CCGGcGGCa- -3'
miRNA:   3'- -UAguGGACCUUGGCGuaGGUC-CCGcu -5'
19086 5' -58 NC_004684.1 + 14742 0.69 0.435876
Target:  5'- -cCACCUGGGAgCGCAagcaugCCGGugauGGCGAc -3'
miRNA:   3'- uaGUGGACCUUgGCGUa-----GGUC----CCGCU- -5'
19086 5' -58 NC_004684.1 + 22121 0.68 0.445396
Target:  5'- -gCGCCUGGcAGCucagCGCGUCCAGcGCGGc -3'
miRNA:   3'- uaGUGGACC-UUG----GCGUAGGUCcCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.