Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19086 | 5' | -58 | NC_004684.1 | + | 59375 | 0.69 | 0.435876 |
Target: 5'- gGUguCCUGGAACCGC--CCGGcGGCa- -3' miRNA: 3'- -UAguGGACCUUGGCGuaGGUC-CCGcu -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 14742 | 0.69 | 0.435876 |
Target: 5'- -cCACCUGGGAgCGCAagcaugCCGGugauGGCGAc -3' miRNA: 3'- uaGUGGACCUUgGCGUa-----GGUC----CCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 15647 | 0.69 | 0.417194 |
Target: 5'- -gCGCCUGGAgcacGCCGCAUUCcuGGCc- -3' miRNA: 3'- uaGUGGACCU----UGGCGUAGGucCCGcu -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 6615 | 0.69 | 0.399009 |
Target: 5'- cUCACC-GGAACCgGCcuggCCAGGGCc- -3' miRNA: 3'- uAGUGGaCCUUGG-CGua--GGUCCCGcu -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 26090 | 0.7 | 0.390109 |
Target: 5'- -cCAUCUGGAAgUGCAucgagUCCuuGGGCGAg -3' miRNA: 3'- uaGUGGACCUUgGCGU-----AGGu-CCCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 4500 | 0.7 | 0.384832 |
Target: 5'- -cCGCCgUGGcAACgGCAuggccgggauccuguUCCGGGGCGAg -3' miRNA: 3'- uaGUGG-ACC-UUGgCGU---------------AGGUCCCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 3027 | 0.7 | 0.38134 |
Target: 5'- gAUCACCgaGGGGCCGCAcaacgaggCCcGGGUGGu -3' miRNA: 3'- -UAGUGGa-CCUUGGCGUa-------GGuCCCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 22626 | 0.7 | 0.347601 |
Target: 5'- -gCGCUgugGGAgGCCGCcgCCAGcGGCGAc -3' miRNA: 3'- uaGUGGa--CCU-UGGCGuaGGUC-CCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 22160 | 0.71 | 0.339507 |
Target: 5'- cAUCACCgaGGAgcACCGCAgggCCAcGGCGGc -3' miRNA: 3'- -UAGUGGa-CCU--UGGCGUa--GGUcCCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 16351 | 0.71 | 0.334716 |
Target: 5'- cGUCACCggcGGuGGCCGCAUCCugccgguggaccagcAGGGCa- -3' miRNA: 3'- -UAGUGGa--CC-UUGGCGUAGG---------------UCCCGcu -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 2487 | 0.71 | 0.323731 |
Target: 5'- cUgACCUGGAGCUGCuaUgAGGGCGGc -3' miRNA: 3'- uAgUGGACCUUGGCGuaGgUCCCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 53368 | 0.71 | 0.31605 |
Target: 5'- gGUCGcCCUGGAugCGguUCCA-GGUGAu -3' miRNA: 3'- -UAGU-GGACCUugGCguAGGUcCCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 32039 | 0.72 | 0.259555 |
Target: 5'- -aCAgCUGGcACCGCGUCCAcuuGGCGAa -3' miRNA: 3'- uaGUgGACCuUGGCGUAGGUc--CCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 3395 | 0.73 | 0.228607 |
Target: 5'- -gCGCCUGGAGaCCGCcgCCAaGGUGAu -3' miRNA: 3'- uaGUGGACCUU-GGCGuaGGUcCCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 53285 | 0.76 | 0.162514 |
Target: 5'- uUCACCUGGAGCUGC-UCCuuGGGGUa- -3' miRNA: 3'- uAGUGGACCUUGGCGuAGG--UCCCGcu -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 34489 | 0.77 | 0.130899 |
Target: 5'- cGUCGCCgaGGucAACCGCGUCgAGGGUGAg -3' miRNA: 3'- -UAGUGGa-CC--UUGGCGUAGgUCCCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 3224 | 0.78 | 0.107995 |
Target: 5'- -gCGCCUGGAagaggugcGCCGCAUCCuGGGCc- -3' miRNA: 3'- uaGUGGACCU--------UGGCGUAGGuCCCGcu -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 31270 | 0.79 | 0.096651 |
Target: 5'- -aCACCUGGAACCGCAUCgucGGCGGc -3' miRNA: 3'- uaGUGGACCUUGGCGUAGgucCCGCU- -5' |
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19086 | 5' | -58 | NC_004684.1 | + | 14018 | 1.06 | 0.000964 |
Target: 5'- cAUCACCUGGAACCGCAUCCAGGGCGAc -3' miRNA: 3'- -UAGUGGACCUUGGCGUAGGUCCCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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