miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 3' -52.3 NC_004684.1 + 15863 0.66 0.915265
Target:  5'- gCUCGGcu-ACCUGGagaagguguCCCgccagGCGGCg -3'
miRNA:   3'- -GGGCCauuUGGACCauu------GGGa----UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 36086 0.66 0.915265
Target:  5'- gCUGGUcuGCCcGGUcACCgaggUACGGCg -3'
miRNA:   3'- gGGCCAuuUGGaCCAuUGGg---AUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 36579 0.66 0.915265
Target:  5'- aUCCGGU-----UGGU-GCCCgACGGCa -3'
miRNA:   3'- -GGGCCAuuuggACCAuUGGGaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 42628 0.66 0.915265
Target:  5'- gCCCGGU--GCC-GGUcuuCCCUGCcaGCa -3'
miRNA:   3'- -GGGCCAuuUGGaCCAuu-GGGAUGc-CG- -5'
19088 3' -52.3 NC_004684.1 + 57054 0.66 0.915265
Target:  5'- cCCCGGcgGggUCgaUGGcGGCCUgcguUGCGGCg -3'
miRNA:   3'- -GGGCCa-UuuGG--ACCaUUGGG----AUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 49463 0.66 0.915265
Target:  5'- aCCCGGUGAACagGGUGAUgaguuCGGUg -3'
miRNA:   3'- -GGGCCAUUUGgaCCAUUGggau-GCCG- -5'
19088 3' -52.3 NC_004684.1 + 54065 0.66 0.915265
Target:  5'- aCCaGGUuuACCgggugcGGUGACCCgggucaaGGCg -3'
miRNA:   3'- gGG-CCAuuUGGa-----CCAUUGGGaug----CCG- -5'
19088 3' -52.3 NC_004684.1 + 63980 0.66 0.915265
Target:  5'- -gCGGUAGACCUccaucACCUUgGCGGCg -3'
miRNA:   3'- ggGCCAUUUGGAccau-UGGGA-UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 13939 0.66 0.915265
Target:  5'- gCCGGUGcuGACacucgcgGGggGCCCU-CGGUg -3'
miRNA:   3'- gGGCCAU--UUGga-----CCauUGGGAuGCCG- -5'
19088 3' -52.3 NC_004684.1 + 12956 0.66 0.915265
Target:  5'- cCCCGGUGcuCCcGccGACCg-GCGGCa -3'
miRNA:   3'- -GGGCCAUuuGGaCcaUUGGgaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 1692 0.66 0.915265
Target:  5'- aCCCGGgcccGAACCUGc--ACCUgGCaGGCa -3'
miRNA:   3'- -GGGCCa---UUUGGACcauUGGGaUG-CCG- -5'
19088 3' -52.3 NC_004684.1 + 66483 0.66 0.914642
Target:  5'- aCCCGGUGgcggcuaGGCCUuggcGGcGGCCUcGCGGg -3'
miRNA:   3'- -GGGCCAU-------UUGGA----CCaUUGGGaUGCCg -5'
19088 3' -52.3 NC_004684.1 + 168 0.66 0.913388
Target:  5'- aCCGGUGaccggguuggucggGACCaccaccaaGGUGGCCCU--GGCa -3'
miRNA:   3'- gGGCCAU--------------UUGGa-------CCAUUGGGAugCCG- -5'
19088 3' -52.3 NC_004684.1 + 27571 0.66 0.908915
Target:  5'- gCCCGGUGGcguuUCgcgGGUGguuuGCCCUcaACGGg -3'
miRNA:   3'- -GGGCCAUUu---GGa--CCAU----UGGGA--UGCCg -5'
19088 3' -52.3 NC_004684.1 + 8450 0.66 0.908915
Target:  5'- gCCCGGcgcaAGGCCUGGcUGuugucCCCggaGGCg -3'
miRNA:   3'- -GGGCCa---UUUGGACC-AUu----GGGaugCCG- -5'
19088 3' -52.3 NC_004684.1 + 47153 0.66 0.908915
Target:  5'- cCCCGGUGc-CCaGG-AGCaCCguaGCGGCg -3'
miRNA:   3'- -GGGCCAUuuGGaCCaUUG-GGa--UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 49299 0.66 0.908915
Target:  5'- gCUCGGUGGccuuGCCguccaGGaucGACCCgucgGCGGCc -3'
miRNA:   3'- -GGGCCAUU----UGGa----CCa--UUGGGa---UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 65813 0.66 0.908915
Target:  5'- aCCGG---GCa-GGUGACCCggaggcaccgGCGGCu -3'
miRNA:   3'- gGGCCauuUGgaCCAUUGGGa---------UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 52225 0.66 0.908915
Target:  5'- cCCCGGcgucgaucAGGCCgUGGU-GCCaCaGCGGCg -3'
miRNA:   3'- -GGGCCa-------UUUGG-ACCAuUGG-GaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 56576 0.66 0.908915
Target:  5'- aCUCGGUGcggcccAGCCgccGGauGCCgCUACGGUg -3'
miRNA:   3'- -GGGCCAU------UUGGa--CCauUGG-GAUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.