miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 5' -59.5 NC_004684.1 + 20234 0.67 0.478016
Target:  5'- gCCGCUACGGugcuccugggcaccgGGGCCGccuacgccaccGAGGCGCAc -3'
miRNA:   3'- -GGCGGUGCU---------------UCCGGCuc---------CUCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 12443 0.67 0.47606
Target:  5'- aCCGUCugGcugcGGGCCGGGGAgcaaucgaccgaGGUACu- -3'
miRNA:   3'- -GGCGGugCu---UCCGGCUCCU------------CCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 21622 0.67 0.47606
Target:  5'- aCCGCCugGAGGuGCgccugccaacCGAGcAGGCGCu- -3'
miRNA:   3'- -GGCGGugCUUC-CG----------GCUCcUCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 17055 0.67 0.47606
Target:  5'- aUGCCAaGGAGGCCGcccgccuGGccGGGCGCAc -3'
miRNA:   3'- gGCGGUgCUUCCGGCu------CC--UCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 48956 0.67 0.466341
Target:  5'- aCGUCggcggGCGGgguGGCCGGGGcGGGCGCGu -3'
miRNA:   3'- gGCGG-----UGCUu--CCGGCUCC-UCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 13091 0.67 0.466341
Target:  5'- gCCGCCAaGggGGCCGAu--GcGCGCAc -3'
miRNA:   3'- -GGCGGUgCuuCCGGCUccuC-CGUGUu -5'
19088 5' -59.5 NC_004684.1 + 15924 0.67 0.466341
Target:  5'- gUCGCCAuccUGggGGCCucGGccaccGGGCGCAu -3'
miRNA:   3'- -GGCGGU---GCuuCCGGcuCC-----UCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 27737 0.67 0.466341
Target:  5'- -gGCaCGCGGAGGCCGGuaccuGGAGGUg--- -3'
miRNA:   3'- ggCG-GUGCUUCCGGCU-----CCUCCGuguu -5'
19088 5' -59.5 NC_004684.1 + 17557 0.67 0.463445
Target:  5'- cCCGCCGuccucgcguccCGAGggaccguaugugauGGCCGGGGAGGacUACGAg -3'
miRNA:   3'- -GGCGGU-----------GCUU--------------CCGGCUCCUCC--GUGUU- -5'
19088 5' -59.5 NC_004684.1 + 15087 0.67 0.456726
Target:  5'- aUCGgCGCGguGGCCGcccuGGAGGC-CGAc -3'
miRNA:   3'- -GGCgGUGCuuCCGGCu---CCUCCGuGUU- -5'
19088 5' -59.5 NC_004684.1 + 46284 0.68 0.437821
Target:  5'- aCGUCGCGgcGGCCGAGcGcguugcGGCGCu- -3'
miRNA:   3'- gGCGGUGCuuCCGGCUC-Cu-----CCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 31262 0.68 0.428538
Target:  5'- gCGCCcccacaggugugGCGAAGGCC-AGcAGGCGCAc -3'
miRNA:   3'- gGCGG------------UGCUUCCGGcUCcUCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 14676 0.68 0.428538
Target:  5'- gCGCCuACGAgcguggcgAGGCCGAcG-GGCGCGAg -3'
miRNA:   3'- gGCGG-UGCU--------UCCGGCUcCuCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 31108 0.68 0.419373
Target:  5'- aCGCCGCGcAGGCgcugGAGGAccuuggcgaccuGGCGCAc -3'
miRNA:   3'- gGCGGUGCuUCCGg---CUCCU------------CCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 27052 0.68 0.418463
Target:  5'- gCCGCCAgCGAccugcccAGcGCCGAGGucgugccugccGGGCGCu- -3'
miRNA:   3'- -GGCGGU-GCU-------UC-CGGCUCC-----------UCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 54433 0.68 0.410327
Target:  5'- gCCGCCGCGucGGCgGGagcaccGGGGGUGCc- -3'
miRNA:   3'- -GGCGGUGCuuCCGgCU------CCUCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 12719 0.68 0.410327
Target:  5'- -aGCCACGccaGAGGCCGuGGAccaGGC-CGAg -3'
miRNA:   3'- ggCGGUGC---UUCCGGCuCCU---CCGuGUU- -5'
19088 5' -59.5 NC_004684.1 + 3519 0.68 0.401404
Target:  5'- aUCGCCgACGGguGGGCCGAccuGGcGGUGCAAg -3'
miRNA:   3'- -GGCGG-UGCU--UCCGGCU---CCuCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 13464 0.68 0.401404
Target:  5'- -aGCaGCuGGAGGCCGAGGAcGGCAa-- -3'
miRNA:   3'- ggCGgUG-CUUCCGGCUCCU-CCGUguu -5'
19088 5' -59.5 NC_004684.1 + 59763 0.68 0.38999
Target:  5'- cCCGCCACGgcGaGCUGgcucucgaccggccAGGAGGCGa-- -3'
miRNA:   3'- -GGCGGUGCuuC-CGGC--------------UCCUCCGUguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.