miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19090 3' -56.5 NC_004684.1 + 61308 0.66 0.671963
Target:  5'- cGGCAGCAccgcCGCCgGGccGCcGCCc -3'
miRNA:   3'- aCCGUCGUuu--GCGGaCCaaCGaCGGu -5'
19090 3' -56.5 NC_004684.1 + 16957 0.66 0.671963
Target:  5'- aGGCcuGCAAGCggGCCUGcaccUGCUGCUg -3'
miRNA:   3'- aCCGu-CGUUUG--CGGACca--ACGACGGu -5'
19090 3' -56.5 NC_004684.1 + 12021 0.66 0.661002
Target:  5'- cGGCGGCGGugGCCaaGGccaUGCUcGaCCAg -3'
miRNA:   3'- aCCGUCGUUugCGGa-CCa--ACGA-C-GGU- -5'
19090 3' -56.5 NC_004684.1 + 32765 0.66 0.661002
Target:  5'- cUGGUGGCGugagcAUGaCCgGGUgGCUGCCGg -3'
miRNA:   3'- -ACCGUCGUu----UGC-GGaCCAaCGACGGU- -5'
19090 3' -56.5 NC_004684.1 + 62511 0.66 0.650014
Target:  5'- cGGCGGgacuugguguccCAGucaGCCUGGUcGCUGgCCAg -3'
miRNA:   3'- aCCGUC------------GUUug-CGGACCAaCGAC-GGU- -5'
19090 3' -56.5 NC_004684.1 + 25336 0.66 0.650014
Target:  5'- aUGGCGGCcuccccGGugGCCuUGGcgGCgGCCu -3'
miRNA:   3'- -ACCGUCG------UUugCGG-ACCaaCGaCGGu -5'
19090 3' -56.5 NC_004684.1 + 35447 0.66 0.650014
Target:  5'- cGGaCAGCGGGCGaCC--GUUGCgGCCGg -3'
miRNA:   3'- aCC-GUCGUUUGC-GGacCAACGaCGGU- -5'
19090 3' -56.5 NC_004684.1 + 40482 0.66 0.63901
Target:  5'- cGGCGGUcuGCGCCgag-UGC-GCCAg -3'
miRNA:   3'- aCCGUCGuuUGCGGaccaACGaCGGU- -5'
19090 3' -56.5 NC_004684.1 + 64485 0.66 0.63901
Target:  5'- aGGcCGGUGGugGCCucguucUGGaacgGCUGCCAc -3'
miRNA:   3'- aCC-GUCGUUugCGG------ACCaa--CGACGGU- -5'
19090 3' -56.5 NC_004684.1 + 15691 0.66 0.628
Target:  5'- cGGCGGCAccGACGCCaccGGcaucgUGCUcCCGg -3'
miRNA:   3'- aCCGUCGU--UUGCGGa--CCa----ACGAcGGU- -5'
19090 3' -56.5 NC_004684.1 + 57205 0.66 0.616993
Target:  5'- aGGCGGC-GGCGCgaUGGUgcucaGCcUGCCGg -3'
miRNA:   3'- aCCGUCGuUUGCGg-ACCAa----CG-ACGGU- -5'
19090 3' -56.5 NC_004684.1 + 43709 0.66 0.616993
Target:  5'- gGGCAGCuugGAUGCgCUGGUa--UGCCu -3'
miRNA:   3'- aCCGUCGu--UUGCG-GACCAacgACGGu -5'
19090 3' -56.5 NC_004684.1 + 39043 0.66 0.616993
Target:  5'- cGGUAGaCGGugGCCugcUGGUUGC-GCUu -3'
miRNA:   3'- aCCGUC-GUUugCGG---ACCAACGaCGGu -5'
19090 3' -56.5 NC_004684.1 + 8453 0.66 0.616993
Target:  5'- cGGC-GCAAG-GCCUGGcUGUUGUCc -3'
miRNA:   3'- aCCGuCGUUUgCGGACCaACGACGGu -5'
19090 3' -56.5 NC_004684.1 + 50991 0.67 0.605999
Target:  5'- cUGGCAGauguaguuGAcCGCCcGGUaGCUGCCc -3'
miRNA:   3'- -ACCGUCgu------UU-GCGGaCCAaCGACGGu -5'
19090 3' -56.5 NC_004684.1 + 59699 0.67 0.605999
Target:  5'- cGGCgacGGCcugGAAUGCCcGGUUGUcccaaUGCCAg -3'
miRNA:   3'- aCCG---UCG---UUUGCGGaCCAACG-----ACGGU- -5'
19090 3' -56.5 NC_004684.1 + 4782 0.67 0.605999
Target:  5'- cGcCAGCAAGCGCCUcGgcGCggugGCCGa -3'
miRNA:   3'- aCcGUCGUUUGCGGAcCaaCGa---CGGU- -5'
19090 3' -56.5 NC_004684.1 + 61569 0.67 0.604901
Target:  5'- cGGCAGCAcucgcgcagcuggGACGCCUcGGUggucgagGCgucccGCCc -3'
miRNA:   3'- aCCGUCGU-------------UUGCGGA-CCAa------CGa----CGGu -5'
19090 3' -56.5 NC_004684.1 + 492 0.67 0.604901
Target:  5'- cGGCAGCAccgacAACGacacgcuCCUGGagcUGCUGCa- -3'
miRNA:   3'- aCCGUCGU-----UUGC-------GGACCa--ACGACGgu -5'
19090 3' -56.5 NC_004684.1 + 55435 0.67 0.595028
Target:  5'- -aGCAGCGuGCGCCggUGGUcuaUGUcGCCAa -3'
miRNA:   3'- acCGUCGUuUGCGG--ACCA---ACGaCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.