miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19090 5' -57.1 NC_004684.1 + 18073 0.66 0.692792
Target:  5'- -aUGGCCGCCgacgGGUCGAuccuggacgGCaaGGCCAc -3'
miRNA:   3'- caACUGGCGGg---CCAGCU---------UGagUCGGU- -5'
19090 5' -57.1 NC_004684.1 + 8873 0.66 0.692792
Target:  5'- -cUGAgCGCCUGcUgGGACUCGGCUc -3'
miRNA:   3'- caACUgGCGGGCcAgCUUGAGUCGGu -5'
19090 5' -57.1 NC_004684.1 + 55303 0.66 0.689611
Target:  5'- -aUGGCCGCCgCGcgggccagcaccucGUCGcGCUCGGCg- -3'
miRNA:   3'- caACUGGCGG-GC--------------CAGCuUGAGUCGgu -5'
19090 5' -57.1 NC_004684.1 + 13021 0.66 0.682173
Target:  5'- --cGACgCGCCCGGUuacgucgcCGGGC-CGGUCGg -3'
miRNA:   3'- caaCUG-GCGGGCCA--------GCUUGaGUCGGU- -5'
19090 5' -57.1 NC_004684.1 + 50325 0.66 0.682173
Target:  5'- --gGugCGCCCGGcCaGGCgggCGGCCu -3'
miRNA:   3'- caaCugGCGGGCCaGcUUGa--GUCGGu -5'
19090 5' -57.1 NC_004684.1 + 30451 0.66 0.682173
Target:  5'- -cUGACCGaCCCc-UCGuucGCUCAGCCu -3'
miRNA:   3'- caACUGGC-GGGccAGCu--UGAGUCGGu -5'
19090 5' -57.1 NC_004684.1 + 18379 0.66 0.682173
Target:  5'- -gUGGCCGaUCUguucagcggGGUCGGGCcCGGCCAg -3'
miRNA:   3'- caACUGGC-GGG---------CCAGCUUGaGUCGGU- -5'
19090 5' -57.1 NC_004684.1 + 25660 0.66 0.682173
Target:  5'- --gGACCGCCCGGUgaucUGGAUgaAGUCGc -3'
miRNA:   3'- caaCUGGCGGGCCA----GCUUGagUCGGU- -5'
19090 5' -57.1 NC_004684.1 + 45122 0.66 0.671509
Target:  5'- cUUGGCCGCCgccaggCGGUCccauGCUCGcGCCu -3'
miRNA:   3'- cAACUGGCGG------GCCAGcu--UGAGU-CGGu -5'
19090 5' -57.1 NC_004684.1 + 2027 0.66 0.671509
Target:  5'- cGUUGACCaggccagcGCCCuGUucgUGGACUaCGGCCAg -3'
miRNA:   3'- -CAACUGG--------CGGGcCA---GCUUGA-GUCGGU- -5'
19090 5' -57.1 NC_004684.1 + 37358 0.66 0.66081
Target:  5'- --gGAUCGCCCccGGUgucuucugcUGuAGCUCGGCCAg -3'
miRNA:   3'- caaCUGGCGGG--CCA---------GC-UUGAGUCGGU- -5'
19090 5' -57.1 NC_004684.1 + 23674 0.66 0.66081
Target:  5'- --cGACgGCCUGGUCGGcC-CGGaCCAg -3'
miRNA:   3'- caaCUGgCGGGCCAGCUuGaGUC-GGU- -5'
19090 5' -57.1 NC_004684.1 + 49652 0.66 0.650085
Target:  5'- gGUUGGCCGCgCCGGauucCGGGCgaccgCAGUUg -3'
miRNA:   3'- -CAACUGGCG-GGCCa---GCUUGa----GUCGGu -5'
19090 5' -57.1 NC_004684.1 + 48882 0.66 0.650085
Target:  5'- cGUUGACCGCCaGcUUGAACUCccAGCg- -3'
miRNA:   3'- -CAACUGGCGGgCcAGCUUGAG--UCGgu -5'
19090 5' -57.1 NC_004684.1 + 16032 0.66 0.650085
Target:  5'- cGUUGACgUGCCCGG-CGAcgACgacaucgUGGCCAa -3'
miRNA:   3'- -CAACUG-GCGGGCCaGCU--UGa------GUCGGU- -5'
19090 5' -57.1 NC_004684.1 + 15513 0.66 0.639345
Target:  5'- --aGGCCGCCCGGggcCGGGCgcuggaGGCg- -3'
miRNA:   3'- caaCUGGCGGGCCa--GCUUGag----UCGgu -5'
19090 5' -57.1 NC_004684.1 + 24784 0.66 0.639345
Target:  5'- --gGGCCG-CUGGUCGAua-CGGCCAa -3'
miRNA:   3'- caaCUGGCgGGCCAGCUugaGUCGGU- -5'
19090 5' -57.1 NC_004684.1 + 4894 0.66 0.639345
Target:  5'- --aGGCgGCCUGGUCGccAC-CGGCCu -3'
miRNA:   3'- caaCUGgCGGGCCAGCu-UGaGUCGGu -5'
19090 5' -57.1 NC_004684.1 + 36769 0.66 0.636121
Target:  5'- --gGGCCGCgcccggugccgacgCUGGUCGGcggcgGCUCGGUCAg -3'
miRNA:   3'- caaCUGGCG--------------GGCCAGCU-----UGAGUCGGU- -5'
19090 5' -57.1 NC_004684.1 + 63173 0.67 0.617855
Target:  5'- gGUUG-CgCGCCgGGUCGAcucgACgCGGCCGa -3'
miRNA:   3'- -CAACuG-GCGGgCCAGCU----UGaGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.