miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19091 3' -62.9 NC_004684.1 + 1827 0.66 0.437041
Target:  5'- uGGCGGCUgACCUgcgguauuacuacggGUaCGCCaCCGCGCu- -3'
miRNA:   3'- -CCGCCGG-UGGG---------------CAaGUGG-GGCGCGcu -5'
19091 3' -62.9 NC_004684.1 + 41949 0.66 0.437041
Target:  5'- cGGCGGCaccaacgGCCuggaggaccgcaaggCGUUCuaugCCCGCGCGGu -3'
miRNA:   3'- -CCGCCGg------UGG---------------GCAAGug--GGGCGCGCU- -5'
19091 3' -62.9 NC_004684.1 + 10965 0.66 0.433455
Target:  5'- uGGCGGCC-UCC-UUgACCCCGagaGCa- -3'
miRNA:   3'- -CCGCCGGuGGGcAAgUGGGGCg--CGcu -5'
19091 3' -62.9 NC_004684.1 + 30233 0.66 0.433455
Target:  5'- aGGCGGCC-CCCGa--ACCCaccaaggugGCGCu- -3'
miRNA:   3'- -CCGCCGGuGGGCaagUGGGg--------CGCGcu -5'
19091 3' -62.9 NC_004684.1 + 12102 0.66 0.433455
Target:  5'- cGGCGGCCAucacgcaaccCCCG---ACCCCG-GCuGAg -3'
miRNA:   3'- -CCGCCGGU----------GGGCaagUGGGGCgCG-CU- -5'
19091 3' -62.9 NC_004684.1 + 6424 0.66 0.433455
Target:  5'- cGGCGGCgGCgUGaaCGCCuUCGCGCu- -3'
miRNA:   3'- -CCGCCGgUGgGCaaGUGG-GGCGCGcu -5'
19091 3' -62.9 NC_004684.1 + 44590 0.66 0.433455
Target:  5'- aGUGGCCauacugguugaACuuGUUCACCggaCGCGgGAg -3'
miRNA:   3'- cCGCCGG-----------UGggCAAGUGGg--GCGCgCU- -5'
19091 3' -62.9 NC_004684.1 + 31289 0.66 0.433455
Target:  5'- cGGCGGCUACCgccgUACCUCG-GUGAc -3'
miRNA:   3'- -CCGCCGGUGGgcaaGUGGGGCgCGCU- -5'
19091 3' -62.9 NC_004684.1 + 50625 0.66 0.433455
Target:  5'- -cUGGUC-CCCGcUCAUCCC-CGCGAg -3'
miRNA:   3'- ccGCCGGuGGGCaAGUGGGGcGCGCU- -5'
19091 3' -62.9 NC_004684.1 + 8993 0.66 0.433455
Target:  5'- cGGCGGCCggGCCaaggCcUCCaCGCGCGGu -3'
miRNA:   3'- -CCGCCGG--UGGgcaaGuGGG-GCGCGCU- -5'
19091 3' -62.9 NC_004684.1 + 57680 0.66 0.433455
Target:  5'- aGCGGCCACaucaGgaCACCUCGcCGuCGAu -3'
miRNA:   3'- cCGCCGGUGgg--CaaGUGGGGC-GC-GCU- -5'
19091 3' -62.9 NC_004684.1 + 63340 0.66 0.424565
Target:  5'- aGGUGGUCucCCCGgugacCGCCCaGCGCa- -3'
miRNA:   3'- -CCGCCGGu-GGGCaa---GUGGGgCGCGcu -5'
19091 3' -62.9 NC_004684.1 + 41442 0.66 0.424565
Target:  5'- cGGCGguGCCGCCgGUgucaguggggcUgACCCCG-GCGGu -3'
miRNA:   3'- -CCGC--CGGUGGgCA-----------AgUGGGGCgCGCU- -5'
19091 3' -62.9 NC_004684.1 + 1234 0.66 0.424565
Target:  5'- cGGCGGCCuggucggucGCCCG---GCCCCG-GCc- -3'
miRNA:   3'- -CCGCCGG---------UGGGCaagUGGGGCgCGcu -5'
19091 3' -62.9 NC_004684.1 + 13623 0.66 0.424565
Target:  5'- aGUGGUuccugCGCaCGUUCGCCgCCGCGCa- -3'
miRNA:   3'- cCGCCG-----GUGgGCAAGUGG-GGCGCGcu -5'
19091 3' -62.9 NC_004684.1 + 42755 0.66 0.424565
Target:  5'- uGGCGGCCugGCCgGUgcgauCCCCGguuugaGCGGc -3'
miRNA:   3'- -CCGCCGG--UGGgCAagu--GGGGCg-----CGCU- -5'
19091 3' -62.9 NC_004684.1 + 57510 0.66 0.424565
Target:  5'- cGGCGGCCugCU------CCUGCGCGGc -3'
miRNA:   3'- -CCGCCGGugGGcaagugGGGCGCGCU- -5'
19091 3' -62.9 NC_004684.1 + 55727 0.66 0.424565
Target:  5'- cGGCGGUCA--CGUUgGCCgCCGUGCu- -3'
miRNA:   3'- -CCGCCGGUggGCAAgUGG-GGCGCGcu -5'
19091 3' -62.9 NC_004684.1 + 20697 0.66 0.423682
Target:  5'- cGUGGCCuaccacgacaccgACCCGgUCACCCCcgaacccgaggaGCGCc- -3'
miRNA:   3'- cCGCCGG-------------UGGGCaAGUGGGG------------CGCGcu -5'
19091 3' -62.9 NC_004684.1 + 26314 0.66 0.415785
Target:  5'- cGGCcaGGCCGCCgGgcCGCCgauugCCGaCGCGGu -3'
miRNA:   3'- -CCG--CCGGUGGgCaaGUGG-----GGC-GCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.