miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19091 5' -53.9 NC_004684.1 + 51623 0.66 0.844803
Target:  5'- uGGCCGCgcUCGgcGCAC-CUUUcgguguacGCGGCc -3'
miRNA:   3'- -UCGGCG--AGCuuCGUGaGAAA--------CGCUGc -5'
19091 5' -53.9 NC_004684.1 + 46285 0.66 0.827072
Target:  5'- cGUCGCggCGGccgAGCGCg--UUGCGGCGc -3'
miRNA:   3'- uCGGCGa-GCU---UCGUGagaAACGCUGC- -5'
19091 5' -53.9 NC_004684.1 + 40399 0.66 0.820669
Target:  5'- cGCCGCgccCGccGCGCUCgcaccggccuggaugGCGGCGu -3'
miRNA:   3'- uCGGCGa--GCuuCGUGAGaaa------------CGCUGC- -5'
19091 5' -53.9 NC_004684.1 + 13302 0.66 0.817895
Target:  5'- cGCCG-UCGGAGCAgCUguacgaCUUcUGCGACGu -3'
miRNA:   3'- uCGGCgAGCUUCGU-GA------GAA-ACGCUGC- -5'
19091 5' -53.9 NC_004684.1 + 31455 0.66 0.80281
Target:  5'- cAGCCGCccguagagcagguccUCGgcGCGagcCUCUUUGCGGu- -3'
miRNA:   3'- -UCGGCG---------------AGCuuCGU---GAGAAACGCUgc -5'
19091 5' -53.9 NC_004684.1 + 4564 0.67 0.780335
Target:  5'- uGCCGaggccaUCGAGGCGCUgCUgcacucgccacccggUGUGACGc -3'
miRNA:   3'- uCGGCg-----AGCUUCGUGA-GAa--------------ACGCUGC- -5'
19091 5' -53.9 NC_004684.1 + 39593 0.67 0.779338
Target:  5'- cAGCUGCUCGGgccaccacgcAGCGCUCccacuccugGCGGgGg -3'
miRNA:   3'- -UCGGCGAGCU----------UCGUGAGaaa------CGCUgC- -5'
19091 5' -53.9 NC_004684.1 + 26709 0.67 0.779338
Target:  5'- uGCUGCUCaAGGUGCUCg--GCGuCGa -3'
miRNA:   3'- uCGGCGAGcUUCGUGAGaaaCGCuGC- -5'
19091 5' -53.9 NC_004684.1 + 45200 0.67 0.769291
Target:  5'- cGCCGCgcuccagCGGcAGCGCgUCcaUGCGGCGc -3'
miRNA:   3'- uCGGCGa------GCU-UCGUG-AGaaACGCUGC- -5'
19091 5' -53.9 NC_004684.1 + 40465 0.67 0.759102
Target:  5'- cGCCuGCUCGggGguCUCg--GCGGu- -3'
miRNA:   3'- uCGG-CGAGCuuCguGAGaaaCGCUgc -5'
19091 5' -53.9 NC_004684.1 + 16433 0.67 0.759102
Target:  5'- uGCCGCUCuucuacGGCAUccucaccuucgUCUUUGgCGACGa -3'
miRNA:   3'- uCGGCGAGcu----UCGUG-----------AGAAAC-GCUGC- -5'
19091 5' -53.9 NC_004684.1 + 3324 0.67 0.759102
Target:  5'- gAGCCGCUacugcaccaGAAGCAUUCg--GCGuuccagGCGg -3'
miRNA:   3'- -UCGGCGAg--------CUUCGUGAGaaaCGC------UGC- -5'
19091 5' -53.9 NC_004684.1 + 48044 0.67 0.747745
Target:  5'- cGCCGCUgGAucAGCgccucccGCUCggccacgGCGGCGg -3'
miRNA:   3'- uCGGCGAgCU--UCG-------UGAGaaa----CGCUGC- -5'
19091 5' -53.9 NC_004684.1 + 43168 0.68 0.727803
Target:  5'- cAGaCCGC-CGAGGuCGCUCggcGCGAUGu -3'
miRNA:   3'- -UC-GGCGaGCUUC-GUGAGaaaCGCUGC- -5'
19091 5' -53.9 NC_004684.1 + 61492 0.68 0.727803
Target:  5'- cGCCGCgcaggCGGcGGCGCUCgaUGCG-CGc -3'
miRNA:   3'- uCGGCGa----GCU-UCGUGAGaaACGCuGC- -5'
19091 5' -53.9 NC_004684.1 + 55308 0.68 0.716094
Target:  5'- cGCCGCgcgggccagcaccUCGucGCGCUCg--GCGGCc -3'
miRNA:   3'- uCGGCG-------------AGCuuCGUGAGaaaCGCUGc -5'
19091 5' -53.9 NC_004684.1 + 32953 0.68 0.70644
Target:  5'- gGGCCGCUCGGgcAGCACacugCUguccucggGCG-CGa -3'
miRNA:   3'- -UCGGCGAGCU--UCGUGa---GAaa------CGCuGC- -5'
19091 5' -53.9 NC_004684.1 + 27309 0.68 0.695644
Target:  5'- uGGCCuGCUCGGugcGGCcagCUUUGaCGACGg -3'
miRNA:   3'- -UCGG-CGAGCU---UCGugaGAAAC-GCUGC- -5'
19091 5' -53.9 NC_004684.1 + 7621 0.68 0.695644
Target:  5'- uGGCCGgUCGAgAGCcaGCUCgccGUGGCGg -3'
miRNA:   3'- -UCGGCgAGCU-UCG--UGAGaaaCGCUGC- -5'
19091 5' -53.9 NC_004684.1 + 47190 0.69 0.651955
Target:  5'- cGCCGCUgCGcGGCGaaCggUGCGGCGg -3'
miRNA:   3'- uCGGCGA-GCuUCGUgaGaaACGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.