miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 3' -52.6 NC_004684.1 + 7147 0.67 0.854935
Target:  5'- cCCg--GAaggUGGcCACCGCCUgcgGGUGCa -3'
miRNA:   3'- -GGaaaCUa--GUC-GUGGCGGAa--CCACGg -5'
19092 3' -52.6 NC_004684.1 + 36218 0.67 0.854935
Target:  5'- gCCUUgcccGAUCuggcccAGCACCGCCgccgggUUGGUGa- -3'
miRNA:   3'- -GGAAa---CUAG------UCGUGGCGG------AACCACgg -5'
19092 3' -52.6 NC_004684.1 + 66310 0.67 0.849849
Target:  5'- gCCUggucaccGAUCacguccAGCGCCGCCagccagcacaaccGGUGCCg -3'
miRNA:   3'- -GGAaa-----CUAG------UCGUGGCGGaa-----------CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 11292 0.67 0.846412
Target:  5'- ---cUGAUCGGCACCacGC--UGGUGgCCa -3'
miRNA:   3'- ggaaACUAGUCGUGG--CGgaACCAC-GG- -5'
19092 3' -52.6 NC_004684.1 + 5875 0.67 0.846412
Target:  5'- gCCg--GG-CAGCACCaGCCUgaccgGGUGgCg -3'
miRNA:   3'- -GGaaaCUaGUCGUGG-CGGAa----CCACgG- -5'
19092 3' -52.6 NC_004684.1 + 64526 0.67 0.846412
Target:  5'- aCCgaUGAcgcccagCGGCucgGCgGCCUUGGUGaCCg -3'
miRNA:   3'- -GGaaACUa------GUCG---UGgCGGAACCAC-GG- -5'
19092 3' -52.6 NC_004684.1 + 27244 0.67 0.846412
Target:  5'- gCCguccUGAaCAGgAUCGCCgaggucGGUGCCg -3'
miRNA:   3'- -GGaa--ACUaGUCgUGGCGGaa----CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 9564 0.67 0.846412
Target:  5'- aCCggcGGcCAGCACCGCCg-GGaccagGCCg -3'
miRNA:   3'- -GGaaaCUaGUCGUGGCGGaaCCa----CGG- -5'
19092 3' -52.6 NC_004684.1 + 63972 0.67 0.846412
Target:  5'- aCUgUGGcggcCAGCGgUGCCagGGUGCCg -3'
miRNA:   3'- gGAaACUa---GUCGUgGCGGaaCCACGG- -5'
19092 3' -52.6 NC_004684.1 + 40619 0.67 0.837663
Target:  5'- aCCacgUUGAUCAcCGCCGCgcggccgacgaaCUUGGggGCCu -3'
miRNA:   3'- -GGa--AACUAGUcGUGGCG------------GAACCa-CGG- -5'
19092 3' -52.6 NC_004684.1 + 12202 0.67 0.837663
Target:  5'- -------cCAGCGCCGCCgccagcGGUGCg -3'
miRNA:   3'- ggaaacuaGUCGUGGCGGaa----CCACGg -5'
19092 3' -52.6 NC_004684.1 + 11505 0.67 0.837663
Target:  5'- gCCUgcuggGAcuccCGGCACCGCUcggUGG-GCCu -3'
miRNA:   3'- -GGAaa---CUa---GUCGUGGCGGa--ACCaCGG- -5'
19092 3' -52.6 NC_004684.1 + 38646 0.67 0.837663
Target:  5'- aCCggUUGuccUC-GCACCGCaCgucGGUGCCg -3'
miRNA:   3'- -GGa-AACu--AGuCGUGGCG-Gaa-CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 32230 0.67 0.828696
Target:  5'- uCCg--GcUCGGcCACCGagUUGGUGCCc -3'
miRNA:   3'- -GGaaaCuAGUC-GUGGCggAACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 42444 0.68 0.819521
Target:  5'- gCCg--GGUCGGCACCGaggaaCUUcucggGGUcGCCg -3'
miRNA:   3'- -GGaaaCUAGUCGUGGCg----GAA-----CCA-CGG- -5'
19092 3' -52.6 NC_004684.1 + 25450 0.68 0.819521
Target:  5'- gCCgUUGGUgCcGCcguugACCGCCUUGGUcacgGCCa -3'
miRNA:   3'- -GGaAACUA-GuCG-----UGGCGGAACCA----CGG- -5'
19092 3' -52.6 NC_004684.1 + 40523 0.68 0.819521
Target:  5'- ---aUGcgCuccuGCGCCGCCUccugcucgcUGGUGCUc -3'
miRNA:   3'- ggaaACuaGu---CGUGGCGGA---------ACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 63840 0.68 0.819521
Target:  5'- ----gGcgCGGCGCaCGCUgucGGUGCCa -3'
miRNA:   3'- ggaaaCuaGUCGUG-GCGGaa-CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 20337 0.68 0.819521
Target:  5'- ----aGAUCGGCGUCGCCc-GGUGCa -3'
miRNA:   3'- ggaaaCUAGUCGUGGCGGaaCCACGg -5'
19092 3' -52.6 NC_004684.1 + 28057 0.68 0.819521
Target:  5'- gCCggUGGUCGGCcCCGgCggugUGGccggGCCg -3'
miRNA:   3'- -GGaaACUAGUCGuGGCgGa---ACCa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.