miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 5' -67.3 NC_004684.1 + 65766 0.66 0.255578
Target:  5'- uGGCCGCCGcGcGCCGgugGGCGcGCgcaCGGCGa -3'
miRNA:   3'- gCCGGUGGC-C-CGGUg--CCGC-CG---GUCGC- -5'
19092 5' -67.3 NC_004684.1 + 11505 0.66 0.255577
Target:  5'- aGGCCAUCGGGCa--GGUccaugcccccGGCCaccuuGGCGu -3'
miRNA:   3'- gCCGGUGGCCCGgugCCG----------CCGG-----UCGC- -5'
19092 5' -67.3 NC_004684.1 + 40859 0.66 0.255577
Target:  5'- cCGGCCugACCGcccaGGCgcgacacgucaGCGGUGGUCAGCa -3'
miRNA:   3'- -GCCGG--UGGC----CCGg----------UGCCGCCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 19109 0.66 0.255577
Target:  5'- aGGCCGgUGGGacgugcgCAUGGUGGCCGaCGa -3'
miRNA:   3'- gCCGGUgGCCCg------GUGCCGCCGGUcGC- -5'
19092 5' -67.3 NC_004684.1 + 54526 0.66 0.255577
Target:  5'- gCGGCgGCCucGGCgGUGGCGGCCucGGCc -3'
miRNA:   3'- -GCCGgUGGc-CCGgUGCCGCCGG--UCGc -5'
19092 5' -67.3 NC_004684.1 + 1381 0.66 0.255577
Target:  5'- uGGCCgacGCCaaGGCCGCcGUugcacuGGCCAGCGa -3'
miRNA:   3'- gCCGG---UGGc-CCGGUGcCG------CCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 48672 0.66 0.25201
Target:  5'- aGGCCuucACCGGGCauguagagcaCuuuggucuugagcguGCGGCGGCCcugccAGCGc -3'
miRNA:   3'- gCCGG---UGGCCCG----------G---------------UGCCGCCGG-----UCGC- -5'
19092 5' -67.3 NC_004684.1 + 57947 0.66 0.249655
Target:  5'- -cGCCugCGGuGCuCGCuGCGGCUGGUGc -3'
miRNA:   3'- gcCGGugGCC-CG-GUGcCGCCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 61492 0.66 0.249655
Target:  5'- -cGCCGCgCaGGCgGCGGCGcucgaugcgcGCCAGCa -3'
miRNA:   3'- gcCGGUG-GcCCGgUGCCGC----------CGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 59157 0.66 0.249654
Target:  5'- uGGCCACCcaGGUCucccCGGCuacGGUCAGCu -3'
miRNA:   3'- gCCGGUGGc-CCGGu---GCCG---CCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 43212 0.66 0.249654
Target:  5'- cCGGCauuUUGGGCgGCGGCaccGCCuGCGg -3'
miRNA:   3'- -GCCGgu-GGCCCGgUGCCGc--CGGuCGC- -5'
19092 5' -67.3 NC_004684.1 + 63360 0.66 0.249654
Target:  5'- aGGCCACCGucGCCAUGcCGGUgaaCGGCa -3'
miRNA:   3'- gCCGGUGGCc-CGGUGCcGCCG---GUCGc -5'
19092 5' -67.3 NC_004684.1 + 7419 0.66 0.249654
Target:  5'- gCGGCaagguCCGGGUgcggCACGaGCGccGCCAGCa -3'
miRNA:   3'- -GCCGgu---GGCCCG----GUGC-CGC--CGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 60686 0.66 0.249654
Target:  5'- uCGGCUugCucgcGCCgACGGUGGCCAGg- -3'
miRNA:   3'- -GCCGGugGcc--CGG-UGCCGCCGGUCgc -5'
19092 5' -67.3 NC_004684.1 + 30477 0.66 0.249069
Target:  5'- uGGCaCGCUcGGCUAUgacccgagcguggGGCGGCUGGCGc -3'
miRNA:   3'- gCCG-GUGGcCCGGUG-------------CCGCCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 1249 0.66 0.249068
Target:  5'- cCGGUCACUGGaCCAacgacacCGGCGaccacuucGCCAGCa -3'
miRNA:   3'- -GCCGGUGGCCcGGU-------GCCGC--------CGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 3920 0.66 0.2479
Target:  5'- aGGCCucgcgcccccgaauGCCGGaaCugGGCGGCgaaGGCGa -3'
miRNA:   3'- gCCGG--------------UGGCCcgGugCCGCCGg--UCGC- -5'
19092 5' -67.3 NC_004684.1 + 19565 0.66 0.246155
Target:  5'- aGGUCuCCGGGCC-UGGCGucgugcaccugcccaGuCCGGCGg -3'
miRNA:   3'- gCCGGuGGCCCGGuGCCGC---------------C-GGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 18380 0.66 0.243845
Target:  5'- uGGCCgaucuguucaGCgGGGUCG-GGCccGGCCAGCa -3'
miRNA:   3'- gCCGG----------UGgCCCGGUgCCG--CCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 12880 0.66 0.243845
Target:  5'- aGGCCGCCgccggGGaGCCuGCGcucGCcGCCAGCGg -3'
miRNA:   3'- gCCGGUGG-----CC-CGG-UGC---CGcCGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.