miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19094 3' -54.6 NC_004684.1 + 55330 0.68 0.720616
Target:  5'- uCGcCGACGgcuggcaggugagccUgGCGC-GCAUGCAGUACa -3'
miRNA:   3'- -GCaGCUGC---------------AgCGUGaCGUGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 44909 0.68 0.716398
Target:  5'- aCGUUGGCGUCGg--UGCGCGCcgGGUAg -3'
miRNA:   3'- -GCAGCUGCAGCgugACGUGCG--UCAUg -5'
19094 3' -54.6 NC_004684.1 + 61809 0.68 0.716398
Target:  5'- cCGUCGGCaggcggGUCGCcUUGCAgGCGGUu- -3'
miRNA:   3'- -GCAGCUG------CAGCGuGACGUgCGUCAug -5'
19094 3' -54.6 NC_004684.1 + 19169 0.68 0.716398
Target:  5'- aCGUCGACaUCGCGgUGUugucuccccCGUGGUGCg -3'
miRNA:   3'- -GCAGCUGcAGCGUgACGu--------GCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 36179 0.68 0.715342
Target:  5'- uCGUUGGCGaCGCGCUgGCACcucagccguggauGCAGcUGCg -3'
miRNA:   3'- -GCAGCUGCaGCGUGA-CGUG-------------CGUC-AUG- -5'
19094 3' -54.6 NC_004684.1 + 39173 0.68 0.7058
Target:  5'- gGUgGGCGgccagguaGCGCagGCugGCGGUGCu -3'
miRNA:   3'- gCAgCUGCag------CGUGa-CGugCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 42363 0.68 0.7058
Target:  5'- aCGUCGAUGcCGCcuccaGCUGCAC-CGGcGCu -3'
miRNA:   3'- -GCAGCUGCaGCG-----UGACGUGcGUCaUG- -5'
19094 3' -54.6 NC_004684.1 + 5386 0.68 0.695131
Target:  5'- cCGUCccCGUCGCgAUUGUGCGCggcgGGUGCg -3'
miRNA:   3'- -GCAGcuGCAGCG-UGACGUGCG----UCAUG- -5'
19094 3' -54.6 NC_004684.1 + 27849 0.68 0.684403
Target:  5'- --cCGAgCG-CGCugUGCACGCAGg-- -3'
miRNA:   3'- gcaGCU-GCaGCGugACGUGCGUCaug -5'
19094 3' -54.6 NC_004684.1 + 56449 0.68 0.673626
Target:  5'- aGUCGAUGUCGCGgCUgaGCAUGCGc--- -3'
miRNA:   3'- gCAGCUGCAGCGU-GA--CGUGCGUcaug -5'
19094 3' -54.6 NC_004684.1 + 28163 0.68 0.673626
Target:  5'- cCGUCGGCG-CGCAagaucaGCGaGCGGUACc -3'
miRNA:   3'- -GCAGCUGCaGCGUga----CGUgCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 37705 0.68 0.673626
Target:  5'- aCGUUGACG-CGCGCa-CGCGCGGUc- -3'
miRNA:   3'- -GCAGCUGCaGCGUGacGUGCGUCAug -5'
19094 3' -54.6 NC_004684.1 + 38649 0.69 0.662811
Target:  5'- gGUUGuCcUCGCACcGCACGuCGGUGCc -3'
miRNA:   3'- gCAGCuGcAGCGUGaCGUGC-GUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 15821 0.69 0.651968
Target:  5'- gGUCGcCGcCGCGCaGCGCGCAcugGCg -3'
miRNA:   3'- gCAGCuGCaGCGUGaCGUGCGUca-UG- -5'
19094 3' -54.6 NC_004684.1 + 1613 0.69 0.651968
Target:  5'- gGUCGcCGUgCGCGCgcccaccgGCGCGCGGcgGCc -3'
miRNA:   3'- gCAGCuGCA-GCGUGa-------CGUGCGUCa-UG- -5'
19094 3' -54.6 NC_004684.1 + 23736 0.69 0.651968
Target:  5'- uCGcUGGCGgCGCACUGCucgguGCGCAGUuCg -3'
miRNA:   3'- -GCaGCUGCaGCGUGACG-----UGCGUCAuG- -5'
19094 3' -54.6 NC_004684.1 + 7841 0.69 0.641107
Target:  5'- gGUgCGACaacggCGCGC-GCugGCGGUGCa -3'
miRNA:   3'- gCA-GCUGca---GCGUGaCGugCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 28895 0.69 0.64002
Target:  5'- cCGUCGGCGUCGguggccuUGCUGaCGC-CGGUGCc -3'
miRNA:   3'- -GCAGCUGCAGC-------GUGAC-GUGcGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 53049 0.69 0.630238
Target:  5'- uGUCGGCGUUGUAC-GCGaugucaGCGGUGg -3'
miRNA:   3'- gCAGCUGCAGCGUGaCGUg-----CGUCAUg -5'
19094 3' -54.6 NC_004684.1 + 46918 0.69 0.630238
Target:  5'- aGUcCGACGUUGCGCUuggggGUGCGCAGc-- -3'
miRNA:   3'- gCA-GCUGCAGCGUGA-----CGUGCGUCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.