miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19094 5' -62 NC_004684.1 + 38957 0.67 0.391228
Target:  5'- cCGGCACCaagcaccgcaCCGaggUGUUCGCGCGCGg--- -3'
miRNA:   3'- -GCCGUGG----------GGC---ACGAGCGUGCGCgagu -5'
19094 5' -62 NC_004684.1 + 31858 0.67 0.391228
Target:  5'- gCGGCuCCUCGUGCcCGCACucgGUGCa-- -3'
miRNA:   3'- -GCCGuGGGGCACGaGCGUG---CGCGagu -5'
19094 5' -62 NC_004684.1 + 13776 0.67 0.391228
Target:  5'- gGGUGUCCgG-GC-CGCGCGUGCUCAa -3'
miRNA:   3'- gCCGUGGGgCaCGaGCGUGCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 16793 0.67 0.382751
Target:  5'- gCGGCGCgUCGUGUggUGgGCGCGC-CAu -3'
miRNA:   3'- -GCCGUGgGGCACGa-GCgUGCGCGaGU- -5'
19094 5' -62 NC_004684.1 + 61592 0.67 0.374397
Target:  5'- gCGGCACguCCCGacCUCGCACGC-CUg- -3'
miRNA:   3'- -GCCGUG--GGGCacGAGCGUGCGcGAgu -5'
19094 5' -62 NC_004684.1 + 28785 0.67 0.374397
Target:  5'- gCGGCAUgccaCCCG-GUUCcgaGCugGUGCUCGa -3'
miRNA:   3'- -GCCGUG----GGGCaCGAG---CGugCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 1054 0.67 0.366168
Target:  5'- gCGGCACCggUUGUGCUgGCugGCGg--- -3'
miRNA:   3'- -GCCGUGG--GGCACGAgCGugCGCgagu -5'
19094 5' -62 NC_004684.1 + 8291 0.67 0.366168
Target:  5'- aCGGCaACCCgGUGCcggagUgGUugGCGCUg- -3'
miRNA:   3'- -GCCG-UGGGgCACG-----AgCGugCGCGAgu -5'
19094 5' -62 NC_004684.1 + 46645 0.67 0.366168
Target:  5'- aCGGCACCgCCugcgGUGcCUC-CAgGCGCUCc -3'
miRNA:   3'- -GCCGUGG-GG----CAC-GAGcGUgCGCGAGu -5'
19094 5' -62 NC_004684.1 + 53649 0.67 0.366168
Target:  5'- gGaGCACCCCGUcgGUgaagCGCAgGCGCa-- -3'
miRNA:   3'- gC-CGUGGGGCA--CGa---GCGUgCGCGagu -5'
19094 5' -62 NC_004684.1 + 56635 0.67 0.350087
Target:  5'- gGGCACgCaCGUugccuGCUCGCuuGCGcCGCUCGa -3'
miRNA:   3'- gCCGUGgG-GCA-----CGAGCG--UGC-GCGAGU- -5'
19094 5' -62 NC_004684.1 + 65798 0.67 0.350087
Target:  5'- -uGCugCUCcUGCaCGCugGCGCUCAg -3'
miRNA:   3'- gcCGugGGGcACGaGCGugCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 12499 0.67 0.350087
Target:  5'- gGGcCGCCUCGUGC-CGCACGUuguGCa-- -3'
miRNA:   3'- gCC-GUGGGGCACGaGCGUGCG---CGagu -5'
19094 5' -62 NC_004684.1 + 22704 0.68 0.343016
Target:  5'- gCGGCGCaggacguggccaaggCCGUgGCUgGCACGCGCg-- -3'
miRNA:   3'- -GCCGUGg--------------GGCA-CGAgCGUGCGCGagu -5'
19094 5' -62 NC_004684.1 + 59166 0.68 0.342237
Target:  5'- aGGUcuCCCCGgcuacggucagcUGCUCGacCACGCGCUUg -3'
miRNA:   3'- gCCGu-GGGGC------------ACGAGC--GUGCGCGAGu -5'
19094 5' -62 NC_004684.1 + 13723 0.68 0.342237
Target:  5'- cCGGCcCaCCCGUGUgCGCcUGCGCUUc -3'
miRNA:   3'- -GCCGuG-GGGCACGaGCGuGCGCGAGu -5'
19094 5' -62 NC_004684.1 + 59947 0.68 0.342237
Target:  5'- aCGuGCGCgUUGUGCUgGCG-GCGCUCGu -3'
miRNA:   3'- -GC-CGUGgGGCACGAgCGUgCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 52009 0.68 0.334514
Target:  5'- uGGCgGCCUCGUaGCcgaucaccaGCGCGCGCUCc -3'
miRNA:   3'- gCCG-UGGGGCA-CGag-------CGUGCGCGAGu -5'
19094 5' -62 NC_004684.1 + 64536 0.68 0.334514
Target:  5'- cCGGCGCgaccaggaaCCCGUGgUC-CAgGUGCUCAu -3'
miRNA:   3'- -GCCGUG---------GGGCACgAGcGUgCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 56035 0.68 0.319455
Target:  5'- cCGGCACCUCGcgGgUCu--CGCGCUCGg -3'
miRNA:   3'- -GCCGUGGGGCa-CgAGcguGCGCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.