miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19095 5' -61.6 NC_004684.1 + 63081 0.66 0.390453
Target:  5'- aGugCGCCcG-GUGCaCCGCgUCCCACu -3'
miRNA:   3'- aCugGCGGaCgUACGcGGCG-AGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 34144 0.66 0.390453
Target:  5'- -cGCCGCCUcggGCGgcacgGUGCUGCUCaCCGg -3'
miRNA:   3'- acUGGCGGA---CGUa----CGCGGCGAG-GGUg -5'
19095 5' -61.6 NC_004684.1 + 30526 0.66 0.390453
Target:  5'- cGGCCaCCaGCAUGuCGCCuuCUUCCACg -3'
miRNA:   3'- aCUGGcGGaCGUAC-GCGGc-GAGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 12068 0.66 0.390453
Target:  5'- cUGGCCGCCgagcGCGacgagGUGCUGg-CCCGCg -3'
miRNA:   3'- -ACUGGCGGa---CGUa----CGCGGCgaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 47555 0.67 0.373404
Target:  5'- cGGCaaCCgGCAUGCGCCGCcgUCaCACg -3'
miRNA:   3'- aCUGgcGGaCGUACGCGGCGa-GG-GUG- -5'
19095 5' -61.6 NC_004684.1 + 18354 0.67 0.373404
Target:  5'- cGACCGgCgGCGcgGUGCCGCUCgacaUCACc -3'
miRNA:   3'- aCUGGCgGaCGUa-CGCGGCGAG----GGUG- -5'
19095 5' -61.6 NC_004684.1 + 24120 0.67 0.373404
Target:  5'- cGGCaCGCCgacGCA-GCaGCCGUaCCCGCu -3'
miRNA:   3'- aCUG-GCGGa--CGUaCG-CGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 55421 0.67 0.365071
Target:  5'- -uGCCGCCggucgcgGUGUGCGCCGCaggUgCCAg -3'
miRNA:   3'- acUGGCGGa------CGUACGCGGCG---AgGGUg -5'
19095 5' -61.6 NC_004684.1 + 1274 0.67 0.365071
Target:  5'- cGACCacuucGCCaGCAcGCGUCGCgUCCGCg -3'
miRNA:   3'- aCUGG-----CGGaCGUaCGCGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 43668 0.67 0.365071
Target:  5'- -cGCCGCCaGCGauguugagcGCGCCGCcgCCCAg -3'
miRNA:   3'- acUGGCGGaCGUa--------CGCGGCGa-GGGUg -5'
19095 5' -61.6 NC_004684.1 + 11679 0.67 0.365071
Target:  5'- gUGACCGCCgcGCAaGCaGCUGCgcaCUACg -3'
miRNA:   3'- -ACUGGCGGa-CGUaCG-CGGCGag-GGUG- -5'
19095 5' -61.6 NC_004684.1 + 18871 0.67 0.365071
Target:  5'- gUGGCCGCacucaggGCAccaGCGCgGCUCcuCCACg -3'
miRNA:   3'- -ACUGGCGga-----CGUa--CGCGgCGAG--GGUG- -5'
19095 5' -61.6 NC_004684.1 + 21755 0.67 0.356868
Target:  5'- cGGCCGCgC-GC-UGCGCCuGUUCCCcgGCa -3'
miRNA:   3'- aCUGGCG-GaCGuACGCGG-CGAGGG--UG- -5'
19095 5' -61.6 NC_004684.1 + 57068 0.67 0.356868
Target:  5'- aUGGCgGCCUGCGuUGCGgCGCg--CACa -3'
miRNA:   3'- -ACUGgCGGACGU-ACGCgGCGaggGUG- -5'
19095 5' -61.6 NC_004684.1 + 40394 0.67 0.348795
Target:  5'- uUGAUCGCC-GCGccCGCCGCgCUCGCa -3'
miRNA:   3'- -ACUGGCGGaCGUacGCGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 20636 0.67 0.348795
Target:  5'- -cGCCGCCUGCGUcCGCaCGCUggacaauaCCGCc -3'
miRNA:   3'- acUGGCGGACGUAcGCG-GCGAg-------GGUG- -5'
19095 5' -61.6 NC_004684.1 + 796 0.67 0.348795
Target:  5'- aUGGCCcucaCCUGCAccuCGCCGUggcggCCCGCa -3'
miRNA:   3'- -ACUGGc---GGACGUac-GCGGCGa----GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 22271 0.67 0.348795
Target:  5'- gGACCGCCUgGCG-GCgGCCaaggCCCGCg -3'
miRNA:   3'- aCUGGCGGA-CGUaCG-CGGcga-GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 57092 0.67 0.348795
Target:  5'- gUGGCCGCCcGCAUGCaCUGgaCCUggaGCg -3'
miRNA:   3'- -ACUGGCGGaCGUACGcGGCgaGGG---UG- -5'
19095 5' -61.6 NC_004684.1 + 53591 0.67 0.348795
Target:  5'- aGGCgGUCgGacaGUGCGCCGCUCUugagCACg -3'
miRNA:   3'- aCUGgCGGaCg--UACGCGGCGAGG----GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.