miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19096 3' -56.9 NC_004684.1 + 55182 0.67 0.684152
Target:  5'- cCGGAGAACgc-ACCgcuggCGgCGGCGCUGg -3'
miRNA:   3'- -GCCUCUUGagcUGGa----GUgGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 64958 0.67 0.684152
Target:  5'- gCGGGcGAugUCGGCCuugUCGCCGGucuggaacggUGCCa -3'
miRNA:   3'- -GCCU-CUugAGCUGG---AGUGGCU----------GCGGc -5'
19096 3' -56.9 NC_004684.1 + 19618 0.67 0.684152
Target:  5'- gCGGuGAcGCUCGGCgaCACCG-UGCUGg -3'
miRNA:   3'- -GCCuCU-UGAGCUGgaGUGGCuGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 56349 0.67 0.684152
Target:  5'- cCGGGGAGaUCGACCa-GCUGAuCGCCc -3'
miRNA:   3'- -GCCUCUUgAGCUGGagUGGCU-GCGGc -5'
19096 3' -56.9 NC_004684.1 + 33172 0.67 0.673673
Target:  5'- aGGcc--CUCGACCucggcaaggucgUCACCGugGCCa -3'
miRNA:   3'- gCCucuuGAGCUGG------------AGUGGCugCGGc -5'
19096 3' -56.9 NC_004684.1 + 40472 0.67 0.673673
Target:  5'- uCGGGGGuCUCGGCggucugCGCCGaguGCGCCa -3'
miRNA:   3'- -GCCUCUuGAGCUGga----GUGGC---UGCGGc -5'
19096 3' -56.9 NC_004684.1 + 15237 0.67 0.673673
Target:  5'- cCGGAcAGCUaCGGCC-CGCCGcUGCCa -3'
miRNA:   3'- -GCCUcUUGA-GCUGGaGUGGCuGCGGc -5'
19096 3' -56.9 NC_004684.1 + 44635 0.67 0.673673
Target:  5'- gGGGGAgcggguACUCGGCC-CACUG-CGUCa -3'
miRNA:   3'- gCCUCU------UGAGCUGGaGUGGCuGCGGc -5'
19096 3' -56.9 NC_004684.1 + 1661 0.67 0.673673
Target:  5'- uGGGGccAGCUCGACUcccuggaACCGACGCa- -3'
miRNA:   3'- gCCUC--UUGAGCUGGag-----UGGCUGCGgc -5'
19096 3' -56.9 NC_004684.1 + 26301 0.67 0.673673
Target:  5'- uCGGuacGcAGCUCGGCCaggcCGCCGGgcCGCCGa -3'
miRNA:   3'- -GCCu--C-UUGAGCUGGa---GUGGCU--GCGGC- -5'
19096 3' -56.9 NC_004684.1 + 50929 0.67 0.663158
Target:  5'- cCGGAcAGCcCGGCCUCGuCCaGGCGCaCGa -3'
miRNA:   3'- -GCCUcUUGaGCUGGAGU-GG-CUGCG-GC- -5'
19096 3' -56.9 NC_004684.1 + 44770 0.67 0.656836
Target:  5'- gCGGcGGcCUcccacagcgccguaaCGGCCUCACCGAgGCCu -3'
miRNA:   3'- -GCCuCUuGA---------------GCUGGAGUGGCUgCGGc -5'
19096 3' -56.9 NC_004684.1 + 9858 0.67 0.652617
Target:  5'- cCGGuGAGCUgCcGCCggaUC-CCGACGCCGc -3'
miRNA:   3'- -GCCuCUUGA-GcUGG---AGuGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 43400 0.67 0.652617
Target:  5'- cCGGAGAACg-GG--UCGCCGcCGCCGa -3'
miRNA:   3'- -GCCUCUUGagCUggAGUGGCuGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 42382 0.67 0.652617
Target:  5'- uGGcAGAGacaaUCGGCCcCGCCGaccccaacGCGCCGa -3'
miRNA:   3'- gCC-UCUUg---AGCUGGaGUGGC--------UGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 31929 0.67 0.650506
Target:  5'- cCGGucGGGGCUCGuuCUCcguggccgcaauCCGACGCCa -3'
miRNA:   3'- -GCC--UCUUGAGCugGAGu-----------GGCUGCGGc -5'
19096 3' -56.9 NC_004684.1 + 10652 0.67 0.642058
Target:  5'- aGGAgcugcccaguGAGgUCGACCggcaCACCGaACGCCu -3'
miRNA:   3'- gCCU----------CUUgAGCUGGa---GUGGC-UGCGGc -5'
19096 3' -56.9 NC_004684.1 + 34212 0.67 0.642058
Target:  5'- aCGGuGA---CGACCUUGCCGAgGUCGa -3'
miRNA:   3'- -GCCuCUugaGCUGGAGUGGCUgCGGC- -5'
19096 3' -56.9 NC_004684.1 + 42715 0.68 0.631491
Target:  5'- uCGGcAGGcCUgGaACCUCACCGcCGUCGg -3'
miRNA:   3'- -GCC-UCUuGAgC-UGGAGUGGCuGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 66911 0.68 0.631491
Target:  5'- uCGGugcuGC-CGACCUCGCUGGC-CCGg -3'
miRNA:   3'- -GCCucu-UGaGCUGGAGUGGCUGcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.