miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19096 5' -57.7 NC_004684.1 + 19683 0.68 0.497869
Target:  5'- -cCGGCGCGgcgGCAaggccuGGCCGAGCcaAGa-- -3'
miRNA:   3'- caGCCGCGCa--UGU------CCGGCUCG--UCaaa -5'
19096 5' -57.7 NC_004684.1 + 58239 0.68 0.497869
Target:  5'- -aCGGUGuCGUcggcCAGGCCGAGCAu--- -3'
miRNA:   3'- caGCCGC-GCAu---GUCCGGCUCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 43766 0.68 0.487718
Target:  5'- -cCGGCGUGguCAGGCCGGGUAcGUc- -3'
miRNA:   3'- caGCCGCGCauGUCCGGCUCGU-CAaa -5'
19096 5' -57.7 NC_004684.1 + 50207 0.68 0.487718
Target:  5'- cGUCGGCGuCGUGCcaGGuGCCGAacacgcGCAGg-- -3'
miRNA:   3'- -CAGCCGC-GCAUG--UC-CGGCU------CGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 49222 0.68 0.487718
Target:  5'- gGUCGGUGC---CGGGCCGGGCGu--- -3'
miRNA:   3'- -CAGCCGCGcauGUCCGGCUCGUcaaa -5'
19096 5' -57.7 NC_004684.1 + 44967 0.68 0.487718
Target:  5'- -aCGGCgaugGCGUugAGGCCcAGCGGg-- -3'
miRNA:   3'- caGCCG----CGCAugUCCGGcUCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 48957 0.68 0.467716
Target:  5'- cGUCGGCGgGcggGguGGCCgGGGCGGg-- -3'
miRNA:   3'- -CAGCCGCgCa--UguCCGG-CUCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 40336 0.68 0.457875
Target:  5'- cUCGGCGCuggGCAGGUCGcuGGCGGc-- -3'
miRNA:   3'- cAGCCGCGca-UGUCCGGC--UCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 65386 0.69 0.438531
Target:  5'- cGUCGGgGCGguccagcgccCAGGCC-AGCAGUg- -3'
miRNA:   3'- -CAGCCgCGCau--------GUCCGGcUCGUCAaa -5'
19096 5' -57.7 NC_004684.1 + 10112 0.69 0.429036
Target:  5'- -gCGGCucgcCGUcACAGGCCGAGCuGUg- -3'
miRNA:   3'- caGCCGc---GCA-UGUCCGGCUCGuCAaa -5'
19096 5' -57.7 NC_004684.1 + 8899 0.69 0.419663
Target:  5'- aGUCGGCGCGgcaagaaggGCGGGCgCG-GCAaGUUc -3'
miRNA:   3'- -CAGCCGCGCa--------UGUCCG-GCuCGU-CAAa -5'
19096 5' -57.7 NC_004684.1 + 47628 0.69 0.401295
Target:  5'- -cCGGCGgGcaccgGCAGGCCGcGCAGg-- -3'
miRNA:   3'- caGCCGCgCa----UGUCCGGCuCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 11097 0.7 0.383448
Target:  5'- -cCGGCGCGccaGGGCCGGGCuGa-- -3'
miRNA:   3'- caGCCGCGCaugUCCGGCUCGuCaaa -5'
19096 5' -57.7 NC_004684.1 + 44910 0.7 0.349368
Target:  5'- cGUUGGCGUcgGUGCGcGCCGGGUAGUc- -3'
miRNA:   3'- -CAGCCGCG--CAUGUcCGGCUCGUCAaa -5'
19096 5' -57.7 NC_004684.1 + 43447 0.71 0.341193
Target:  5'- gGUCGGUGCG-GCGGGCgCGgcAGCAGg-- -3'
miRNA:   3'- -CAGCCGCGCaUGUCCG-GC--UCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 25870 0.71 0.32526
Target:  5'- -aCGGCcuCGgcCAGGCCGGGCAGa-- -3'
miRNA:   3'- caGCCGc-GCauGUCCGGCUCGUCaaa -5'
19096 5' -57.7 NC_004684.1 + 41272 0.71 0.317503
Target:  5'- -cUGGUGCGgucggACAGcGCCGAGguGUUg -3'
miRNA:   3'- caGCCGCGCa----UGUC-CGGCUCguCAAa -5'
19096 5' -57.7 NC_004684.1 + 35632 0.71 0.317503
Target:  5'- uUCcGCGCGUGguGGCCGAGUcGUUc -3'
miRNA:   3'- cAGcCGCGCAUguCCGGCUCGuCAAa -5'
19096 5' -57.7 NC_004684.1 + 61696 0.74 0.217659
Target:  5'- cGUCGGUGcCGUggGCAGGCCGGGCc---- -3'
miRNA:   3'- -CAGCCGC-GCA--UGUCCGGCUCGucaaa -5'
19096 5' -57.7 NC_004684.1 + 5858 0.74 0.217659
Target:  5'- --aGGCGUGcgacugGCAGGCCGGGCAGc-- -3'
miRNA:   3'- cagCCGCGCa-----UGUCCGGCUCGUCaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.