miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19097 5' -54.7 NC_004684.1 + 59516 0.66 0.79735
Target:  5'- gGGCGCG-UCGuaggcCUGcGCACAGGUc- -3'
miRNA:   3'- aCUGCGCgAGCuu---GAC-CGUGUCCAac -5'
19097 5' -54.7 NC_004684.1 + 29469 0.66 0.79735
Target:  5'- gGGCGUGCaugcuggUGAGCU-GCAuCAGGUUGu -3'
miRNA:   3'- aCUGCGCGa------GCUUGAcCGU-GUCCAAC- -5'
19097 5' -54.7 NC_004684.1 + 42817 0.66 0.79735
Target:  5'- gGACGUGCUCGcccggcaugAGCaUGGC-CGGGa-- -3'
miRNA:   3'- aCUGCGCGAGC---------UUG-ACCGuGUCCaac -5'
19097 5' -54.7 NC_004684.1 + 37708 0.66 0.79735
Target:  5'- uUGACGCGCgcacgcgCGGuCUGGUcggccgcgcGCAGGa-- -3'
miRNA:   3'- -ACUGCGCGa------GCUuGACCG---------UGUCCaac -5'
19097 5' -54.7 NC_004684.1 + 63544 0.66 0.787626
Target:  5'- cGugGCGCUCGGccuccucggccGCUGcCAuCAGGUc- -3'
miRNA:   3'- aCugCGCGAGCU-----------UGACcGU-GUCCAac -5'
19097 5' -54.7 NC_004684.1 + 6444 0.66 0.787626
Target:  5'- --uCGCGCUUGGcCgaGGCGCAGGg-- -3'
miRNA:   3'- acuGCGCGAGCUuGa-CCGUGUCCaac -5'
19097 5' -54.7 NC_004684.1 + 57554 0.66 0.787626
Target:  5'- cGAC-CGC-CGAGCU-GCGCcGGUUGg -3'
miRNA:   3'- aCUGcGCGaGCUUGAcCGUGuCCAAC- -5'
19097 5' -54.7 NC_004684.1 + 53172 0.66 0.787626
Target:  5'- cGAUGCGUUCGccgaUGGCACc-GUUGa -3'
miRNA:   3'- aCUGCGCGAGCuug-ACCGUGucCAAC- -5'
19097 5' -54.7 NC_004684.1 + 30987 0.66 0.777741
Target:  5'- cGugGCGCUCGAGgaGGU--AGGc-- -3'
miRNA:   3'- aCugCGCGAGCUUgaCCGugUCCaac -5'
19097 5' -54.7 NC_004684.1 + 58335 0.66 0.766695
Target:  5'- aUGGCGCGCcCGGuggcccuGCUGGCguugccgcGCcGGUUGc -3'
miRNA:   3'- -ACUGCGCGaGCU-------UGACCG--------UGuCCAAC- -5'
19097 5' -54.7 NC_004684.1 + 47806 0.66 0.757533
Target:  5'- cGGC-CGC-CGGACUGG-GCAGGUg- -3'
miRNA:   3'- aCUGcGCGaGCUUGACCgUGUCCAac -5'
19097 5' -54.7 NC_004684.1 + 66117 0.66 0.757533
Target:  5'- cGACGCGUgcuggCGAAgUGGuCGCcGGUg- -3'
miRNA:   3'- aCUGCGCGa----GCUUgACC-GUGuCCAac -5'
19097 5' -54.7 NC_004684.1 + 62092 0.66 0.757533
Target:  5'- -aGCGCGUcgUCGuAGCUGGCGCuGGc-- -3'
miRNA:   3'- acUGCGCG--AGC-UUGACCGUGuCCaac -5'
19097 5' -54.7 NC_004684.1 + 57862 0.66 0.757533
Target:  5'- cGGCGCaccaGCUCGcggucggaAGCUGGCGCAGc--- -3'
miRNA:   3'- aCUGCG----CGAGC--------UUGACCGUGUCcaac -5'
19097 5' -54.7 NC_004684.1 + 65325 0.67 0.747233
Target:  5'- cUGGCGCGCUCcaccACgUGGCGCuGGc-- -3'
miRNA:   3'- -ACUGCGCGAGcu--UG-ACCGUGuCCaac -5'
19097 5' -54.7 NC_004684.1 + 65870 0.67 0.726297
Target:  5'- gGuCGCGUcgucgccgUUGAGCgcgGcGCGCAGGUUGg -3'
miRNA:   3'- aCuGCGCG--------AGCUUGa--C-CGUGUCCAAC- -5'
19097 5' -54.7 NC_004684.1 + 9305 0.67 0.726297
Target:  5'- cGGCGCGCucccggUCGAGCUGcacgguGCGCAcGGUc- -3'
miRNA:   3'- aCUGCGCG------AGCUUGAC------CGUGU-CCAac -5'
19097 5' -54.7 NC_004684.1 + 22364 0.67 0.726297
Target:  5'- cGGCgGCGgUCGcGCUGGCGguGGa-- -3'
miRNA:   3'- aCUG-CGCgAGCuUGACCGUguCCaac -5'
19097 5' -54.7 NC_004684.1 + 49711 0.67 0.715683
Target:  5'- -cACGCGCUCG-GC-GGCGCGGcGUUc -3'
miRNA:   3'- acUGCGCGAGCuUGaCCGUGUC-CAAc -5'
19097 5' -54.7 NC_004684.1 + 17466 0.67 0.704988
Target:  5'- cGuACGCGCccugcucaUCGAcCUGGUGCAGGa-- -3'
miRNA:   3'- aC-UGCGCG--------AGCUuGACCGUGUCCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.