Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19098 | 3' | -53.3 | NC_004684.1 | + | 33297 | 0.67 | 0.80537 |
Target: 5'- --gUGGUGcUCGCGCGGGuGGCCUCGc -3' miRNA: 3'- cugACCAUuGGCGCGUUUuCUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 43454 | 0.67 | 0.80537 |
Target: 5'- aGGCgGGU-GCCGCGCA----GCUCCGg -3' miRNA: 3'- -CUGaCCAuUGGCGCGUuuucUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 58354 | 0.67 | 0.812944 |
Target: 5'- uGCUGGcguuGCCGCGCcgguugccGCCCCGc -3' miRNA: 3'- cUGACCau--UGGCGCGuuuuc---UGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 39796 | 0.67 | 0.813882 |
Target: 5'- cGCUGGUAGCUGCGCcGguccaugucggacAGGugCuuGg -3' miRNA: 3'- cUGACCAUUGGCGCGuU-------------UUCugGggC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 26907 | 0.67 | 0.814819 |
Target: 5'- uGCUGGcgcacuCgGCGCAGaccgccGAGACCCCc -3' miRNA: 3'- cUGACCauu---GgCGCGUU------UUCUGGGGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 20016 | 0.67 | 0.814819 |
Target: 5'- cACcGGaGGCCGUGguGccugAAGACCCCGc -3' miRNA: 3'- cUGaCCaUUGGCGCguU----UUCUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 1460 | 0.67 | 0.824075 |
Target: 5'- -cCUGGUcgaGACCGgGCcGGAcGugCCCGg -3' miRNA: 3'- cuGACCA---UUGGCgCGuUUU-CugGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 54289 | 0.67 | 0.824075 |
Target: 5'- cGGCcGGggGugCGCGCAuc-GGCCCCc -3' miRNA: 3'- -CUGaCCa-UugGCGCGUuuuCUGGGGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 19464 | 0.67 | 0.824075 |
Target: 5'- cGGC-GGUGGcCCGCGCGAcaugcGCCCCu -3' miRNA: 3'- -CUGaCCAUU-GGCGCGUUuuc--UGGGGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 5319 | 0.66 | 0.830434 |
Target: 5'- cGCUGGcGACCGUGCAGcaguggguggcgguGGGcugacaugcccACCCCGc -3' miRNA: 3'- cUGACCaUUGGCGCGUU--------------UUC-----------UGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 55453 | 0.66 | 0.833129 |
Target: 5'- aGGCUGGcGACCaugGCcaGCGGAcGGCCCUGg -3' miRNA: 3'- -CUGACCaUUGG---CG--CGUUUuCUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 7741 | 0.66 | 0.836691 |
Target: 5'- cGACUGGcgcgcaugggggaccUGACCGgGCc---GACCCCc -3' miRNA: 3'- -CUGACC---------------AUUGGCgCGuuuuCUGGGGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 48964 | 0.66 | 0.841096 |
Target: 5'- gGGCggGGUGGCCggggcggGCGCGucGGugCCCu -3' miRNA: 3'- -CUGa-CCAUUGG-------CGCGUuuUCugGGGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 62993 | 0.66 | 0.841971 |
Target: 5'- uGGCcGGUGGCCgggaacgcgauGCGCAGGAuGACCgCGc -3' miRNA: 3'- -CUGaCCAUUGG-----------CGCGUUUU-CUGGgGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 5785 | 0.66 | 0.841971 |
Target: 5'- uGCgUGGUGugCGgGCGGGAcGCCUCGa -3' miRNA: 3'- cUG-ACCAUugGCgCGUUUUcUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 41149 | 0.66 | 0.850592 |
Target: 5'- -uCUGGgguacGCCGCGCc--GGACCCgCGc -3' miRNA: 3'- cuGACCau---UGGCGCGuuuUCUGGG-GC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 19125 | 0.66 | 0.850592 |
Target: 5'- cGCaUGGUGGCCGaCGaCAAcGGAcgccuCCCCGg -3' miRNA: 3'- cUG-ACCAUUGGC-GC-GUUuUCU-----GGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 54500 | 0.66 | 0.858983 |
Target: 5'- cGCUGGcGGCgaGCGCAGGcu-CCCCGg -3' miRNA: 3'- cUGACCaUUGg-CGCGUUUucuGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 57590 | 0.66 | 0.858983 |
Target: 5'- aGCgucgGGUGccACCgGCGCA--GGGCCUCGg -3' miRNA: 3'- cUGa---CCAU--UGG-CGCGUuuUCUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 31174 | 0.66 | 0.858983 |
Target: 5'- uGCUGGgccaGAUCGgGCA--AGGCCUCGu -3' miRNA: 3'- cUGACCa---UUGGCgCGUuuUCUGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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