miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19098 3' -53.3 NC_004684.1 + 39796 0.67 0.813882
Target:  5'- cGCUGGUAGCUGCGCcGguccaugucggacAGGugCuuGg -3'
miRNA:   3'- cUGACCAUUGGCGCGuU-------------UUCugGggC- -5'
19098 3' -53.3 NC_004684.1 + 41149 0.66 0.850592
Target:  5'- -uCUGGgguacGCCGCGCc--GGACCCgCGc -3'
miRNA:   3'- cuGACCau---UGGCGCGuuuUCUGGG-GC- -5'
19098 3' -53.3 NC_004684.1 + 41996 0.66 0.867137
Target:  5'- ---cGGUGGCCGCugGCGAcaaccuccuGGAUCCCGu -3'
miRNA:   3'- cugaCCAUUGGCG--CGUUu--------UCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 42209 0.69 0.702708
Target:  5'- aGCUGGUGGCCGaCGU----GGCCgCCGg -3'
miRNA:   3'- cUGACCAUUGGC-GCGuuuuCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 43454 0.67 0.80537
Target:  5'- aGGCgGGU-GCCGCGCA----GCUCCGg -3'
miRNA:   3'- -CUGaCCAuUGGCGCGUuuucUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 46876 0.69 0.724158
Target:  5'- --gUGGUGuauCCGCGCGAcaugucagccGAGcCCCCGc -3'
miRNA:   3'- cugACCAUu--GGCGCGUU----------UUCuGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 47246 0.7 0.659069
Target:  5'- gGGCgcgagGGUAgcgGCUGCGCGGAacAGGCCCUc -3'
miRNA:   3'- -CUGa----CCAU---UGGCGCGUUU--UCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 48505 0.7 0.626037
Target:  5'- cGACgUGGaggAGCCGCGCu--GGugCCCu -3'
miRNA:   3'- -CUG-ACCa--UUGGCGCGuuuUCugGGGc -5'
19098 3' -53.3 NC_004684.1 + 48964 0.66 0.841096
Target:  5'- gGGCggGGUGGCCggggcggGCGCGucGGugCCCu -3'
miRNA:   3'- -CUGa-CCAUUGG-------CGCGUuuUCugGGGc -5'
19098 3' -53.3 NC_004684.1 + 49648 0.66 0.867137
Target:  5'- aGGC-GGuUGGCCGCGCc--GGAUUCCGg -3'
miRNA:   3'- -CUGaCC-AUUGGCGCGuuuUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 51650 0.74 0.398846
Target:  5'- aGCUGcUGGCCGUGCAcGAGGCCCUu -3'
miRNA:   3'- cUGACcAUUGGCGCGUuUUCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 54289 0.67 0.824075
Target:  5'- cGGCcGGggGugCGCGCAuc-GGCCCCc -3'
miRNA:   3'- -CUGaCCa-UugGCGCGUuuuCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 54500 0.66 0.858983
Target:  5'- cGCUGGcGGCgaGCGCAGGcu-CCCCGg -3'
miRNA:   3'- cUGACCaUUGg-CGCGUUUucuGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 55453 0.66 0.833129
Target:  5'- aGGCUGGcGACCaugGCcaGCGGAcGGCCCUGg -3'
miRNA:   3'- -CUGACCaUUGG---CG--CGUUUuCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 55483 0.66 0.858983
Target:  5'- nGGCUgucGGUGguGCCGCGCAcguuGAaUCCCGg -3'
miRNA:   3'- -CUGA---CCAU--UGGCGCGUuuu-CU-GGGGC- -5'
19098 3' -53.3 NC_004684.1 + 55644 0.67 0.785939
Target:  5'- cGGCUGGcGugCGUGgAGGAGGgCCUGg -3'
miRNA:   3'- -CUGACCaUugGCGCgUUUUCUgGGGC- -5'
19098 3' -53.3 NC_004684.1 + 56851 0.67 0.785939
Target:  5'- aGCUGGUGgagcACCacgaggucaGCGCAcccuGGCCCCGc -3'
miRNA:   3'- cUGACCAU----UGG---------CGCGUuuu-CUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 56947 0.69 0.724158
Target:  5'- gGACUGGUGcACgGCGCAcagcguGGAGGCCaaCCu -3'
miRNA:   3'- -CUGACCAU-UGgCGCGU------UUUCUGG--GGc -5'
19098 3' -53.3 NC_004684.1 + 57325 0.68 0.745241
Target:  5'- cGACUGGccguaGGCCacacaGaCAAAAGACCCCGc -3'
miRNA:   3'- -CUGACCa----UUGGcg---C-GUUUUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 57590 0.66 0.858983
Target:  5'- aGCgucgGGUGccACCgGCGCA--GGGCCUCGg -3'
miRNA:   3'- cUGa---CCAU--UGG-CGCGUuuUCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.