miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19098 3' -53.3 NC_004684.1 + 5922 0.7 0.626037
Target:  5'- cGACcGGcUGGCCGCGCu---GGCCaCCGg -3'
miRNA:   3'- -CUGaCC-AUUGGCGCGuuuuCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 31097 0.74 0.435584
Target:  5'- gGGCUGGcaggacGCCGCGCAggcgcugGAGGACCuuGg -3'
miRNA:   3'- -CUGACCau----UGGCGCGU-------UUUCUGGggC- -5'
19098 3' -53.3 NC_004684.1 + 25252 0.71 0.600731
Target:  5'- cGCUGGUGaaggcgcuggagaaGCUGCGCAccAAGGGCCuuCCGg -3'
miRNA:   3'- cUGACCAU--------------UGGCGCGU--UUUCUGG--GGC- -5'
19098 3' -53.3 NC_004684.1 + 7510 0.71 0.560362
Target:  5'- cGCUGGccGCCGCGCGcguGACCCg- -3'
miRNA:   3'- cUGACCauUGGCGCGUuuuCUGGGgc -5'
19098 3' -53.3 NC_004684.1 + 15379 0.68 0.755617
Target:  5'- cGCUGGUGAUCG-GCuacGAGGCCgCCa -3'
miRNA:   3'- cUGACCAUUGGCgCGuu-UUCUGG-GGc -5'
19098 3' -53.3 NC_004684.1 + 48964 0.66 0.841096
Target:  5'- gGGCggGGUGGCCggggcggGCGCGucGGugCCCu -3'
miRNA:   3'- -CUGa-CCAUUGG-------CGCGUuuUCugGGGc -5'
19098 3' -53.3 NC_004684.1 + 62993 0.66 0.841971
Target:  5'- uGGCcGGUGGCCgggaacgcgauGCGCAGGAuGACCgCGc -3'
miRNA:   3'- -CUGaCCAUUGG-----------CGCGUUUU-CUGGgGC- -5'
19098 3' -53.3 NC_004684.1 + 41149 0.66 0.850592
Target:  5'- -uCUGGgguacGCCGCGCc--GGACCCgCGc -3'
miRNA:   3'- cuGACCau---UGGCGCGuuuUCUGGG-GC- -5'
19098 3' -53.3 NC_004684.1 + 19464 0.67 0.824075
Target:  5'- cGGC-GGUGGcCCGCGCGAcaugcGCCCCu -3'
miRNA:   3'- -CUGaCCAUU-GGCGCGUUuuc--UGGGGc -5'
19098 3' -53.3 NC_004684.1 + 20016 0.67 0.814819
Target:  5'- cACcGGaGGCCGUGguGccugAAGACCCCGc -3'
miRNA:   3'- cUGaCCaUUGGCGCguU----UUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 41996 0.66 0.867137
Target:  5'- ---cGGUGGCCGCugGCGAcaaccuccuGGAUCCCGu -3'
miRNA:   3'- cugaCCAUUGGCG--CGUUu--------UCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 20062 0.66 0.867137
Target:  5'- cGCguucGUGGCCGCGCucAAGcuggcguucaACCCCGa -3'
miRNA:   3'- cUGac--CAUUGGCGCGuuUUC----------UGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 13684 0.66 0.875046
Target:  5'- gGACaUGGUGGCCGguucgggcaCGCcGAAGAucaUCCCGa -3'
miRNA:   3'- -CUG-ACCAUUGGC---------GCGuUUUCU---GGGGC- -5'
19098 3' -53.3 NC_004684.1 + 58354 0.67 0.812944
Target:  5'- uGCUGGcguuGCCGCGCcgguugccGCCCCGc -3'
miRNA:   3'- cUGACCau--UGGCGCGuuuuc---UGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 39796 0.67 0.813882
Target:  5'- cGCUGGUAGCUGCGCcGguccaugucggacAGGugCuuGg -3'
miRNA:   3'- cUGACCAUUGGCGCGuU-------------UUCugGggC- -5'
19098 3' -53.3 NC_004684.1 + 33297 0.67 0.80537
Target:  5'- --gUGGUGcUCGCGCGGGuGGCCUCGc -3'
miRNA:   3'- cugACCAUuGGCGCGUUUuCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 56851 0.67 0.785939
Target:  5'- aGCUGGUGgagcACCacgaggucaGCGCAcccuGGCCCCGc -3'
miRNA:   3'- cUGACCAU----UGG---------CGCGUuuu-CUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 55644 0.67 0.785939
Target:  5'- cGGCUGGcGugCGUGgAGGAGGgCCUGg -3'
miRNA:   3'- -CUGACCaUugGCGCgUUUUCUgGGGC- -5'
19098 3' -53.3 NC_004684.1 + 27840 0.67 0.784949
Target:  5'- uGCUGGgcACCGagcgcgcugugcaCGCAGGAGugCCgGu -3'
miRNA:   3'- cUGACCauUGGC-------------GCGUUUUCugGGgC- -5'
19098 3' -53.3 NC_004684.1 + 28128 0.68 0.755617
Target:  5'- uGCUGGUGGCCugcaCGCAcgcAGGCCUCa -3'
miRNA:   3'- cUGACCAUUGGc---GCGUuu-UCUGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.