miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19098 3' -53.3 NC_004684.1 + 54289 0.67 0.824075
Target:  5'- cGGCcGGggGugCGCGCAuc-GGCCCCc -3'
miRNA:   3'- -CUGaCCa-UugGCGCGUuuuCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 19464 0.67 0.824075
Target:  5'- cGGC-GGUGGcCCGCGCGAcaugcGCCCCu -3'
miRNA:   3'- -CUGaCCAUU-GGCGCGUUuuc--UGGGGc -5'
19098 3' -53.3 NC_004684.1 + 20016 0.67 0.814819
Target:  5'- cACcGGaGGCCGUGguGccugAAGACCCCGc -3'
miRNA:   3'- cUGaCCaUUGGCGCguU----UUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 26907 0.67 0.814819
Target:  5'- uGCUGGcgcacuCgGCGCAGaccgccGAGACCCCc -3'
miRNA:   3'- cUGACCauu---GgCGCGUU------UUCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 39796 0.67 0.813882
Target:  5'- cGCUGGUAGCUGCGCcGguccaugucggacAGGugCuuGg -3'
miRNA:   3'- cUGACCAUUGGCGCGuU-------------UUCugGggC- -5'
19098 3' -53.3 NC_004684.1 + 58354 0.67 0.812944
Target:  5'- uGCUGGcguuGCCGCGCcgguugccGCCCCGc -3'
miRNA:   3'- cUGACCau--UGGCGCGuuuuc---UGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 43454 0.67 0.80537
Target:  5'- aGGCgGGU-GCCGCGCA----GCUCCGg -3'
miRNA:   3'- -CUGaCCAuUGGCGCGUuuucUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 33297 0.67 0.80537
Target:  5'- --gUGGUGcUCGCGCGGGuGGCCUCGc -3'
miRNA:   3'- cugACCAUuGGCGCGUUUuCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 61180 0.67 0.785939
Target:  5'- aGCUGGccgaGAUCGCGCcGGAGGCCaUCGa -3'
miRNA:   3'- cUGACCa---UUGGCGCGuUUUCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 13120 0.67 0.785939
Target:  5'- cGGCcgGGUGGCgGCGCuggcuGAGGAgcugUCCCGg -3'
miRNA:   3'- -CUGa-CCAUUGgCGCGu----UUUCU----GGGGC- -5'
19098 3' -53.3 NC_004684.1 + 56851 0.67 0.785939
Target:  5'- aGCUGGUGgagcACCacgaggucaGCGCAcccuGGCCCCGc -3'
miRNA:   3'- cUGACCAU----UGG---------CGCGUuuu-CUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 55644 0.67 0.785939
Target:  5'- cGGCUGGcGugCGUGgAGGAGGgCCUGg -3'
miRNA:   3'- -CUGACCaUugGCGCgUUUUCUgGGGC- -5'
19098 3' -53.3 NC_004684.1 + 27840 0.67 0.784949
Target:  5'- uGCUGGgcACCGagcgcgcugugcaCGCAGGAGugCCgGu -3'
miRNA:   3'- cUGACCauUGGC-------------GCGUUUUCugGGgC- -5'
19098 3' -53.3 NC_004684.1 + 36857 0.67 0.783959
Target:  5'- cGACUGGUcggAGCCGUcgGCGGugaacuucaccGACCCCa -3'
miRNA:   3'- -CUGACCA---UUGGCG--CGUUuu---------CUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 14378 0.68 0.759732
Target:  5'- nGACUGGcUGACCGacaccgggccgucgcCGCAGGAGAUgCUGc -3'
miRNA:   3'- -CUGACC-AUUGGC---------------GCGUUUUCUGgGGC- -5'
19098 3' -53.3 NC_004684.1 + 14087 0.68 0.755617
Target:  5'- cGACcagGGUGACCGgGUGGuguGGcucaGCCCCGg -3'
miRNA:   3'- -CUGa--CCAUUGGCgCGUUu--UC----UGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 15379 0.68 0.755617
Target:  5'- cGCUGGUGAUCG-GCuacGAGGCCgCCa -3'
miRNA:   3'- cUGACCAUUGGCgCGuu-UUCUGG-GGc -5'
19098 3' -53.3 NC_004684.1 + 28128 0.68 0.755617
Target:  5'- uGCUGGUGGCCugcaCGCAcgcAGGCCUCa -3'
miRNA:   3'- cUGACCAUUGGc---GCGUuu-UCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 57325 0.68 0.745241
Target:  5'- cGACUGGccguaGGCCacacaGaCAAAAGACCCCGc -3'
miRNA:   3'- -CUGACCa----UUGGcg---C-GUUUUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 46876 0.69 0.724158
Target:  5'- --gUGGUGuauCCGCGCGAcaugucagccGAGcCCCCGc -3'
miRNA:   3'- cugACCAUu--GGCGCGUU----------UUCuGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.