miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19099 3' -64 NC_004684.1 + 25646 0.66 0.38162
Target:  5'- aACCGGGUGUaguuggaccGCCcgGUGAUCUGGaugaaGUCGc -3'
miRNA:   3'- -UGGCCCGCG---------CGG--UACUGGGCCg----CAGC- -5'
19099 3' -64 NC_004684.1 + 59067 0.66 0.38162
Target:  5'- cGCUGGcGCGCaCCucu-UCCGGCGUCa -3'
miRNA:   3'- -UGGCC-CGCGcGGuacuGGGCCGCAGc -5'
19099 3' -64 NC_004684.1 + 7641 0.66 0.38162
Target:  5'- cGCCGuGGCggGCGUgGUGACCgGGuCGgCGg -3'
miRNA:   3'- -UGGC-CCG--CGCGgUACUGGgCC-GCaGC- -5'
19099 3' -64 NC_004684.1 + 41501 0.66 0.381619
Target:  5'- aACCGGGUGU-CCAUGGCCCGcuaCGagGc -3'
miRNA:   3'- -UGGCCCGCGcGGUACUGGGCc--GCagC- -5'
19099 3' -64 NC_004684.1 + 20036 0.66 0.373448
Target:  5'- cGCCGGGUccuaCCGUGGCCUGGUGg-- -3'
miRNA:   3'- -UGGCCCGcgc-GGUACUGGGCCGCagc -5'
19099 3' -64 NC_004684.1 + 6091 0.66 0.373448
Target:  5'- gGCgGcGGUGCuGCCGgaaaucGACCCGGCG-Ca -3'
miRNA:   3'- -UGgC-CCGCG-CGGUa-----CUGGGCCGCaGc -5'
19099 3' -64 NC_004684.1 + 6862 0.66 0.373448
Target:  5'- cACCGGGCGCGgCGaGAUcagCCuGCgGUCGa -3'
miRNA:   3'- -UGGCCCGCGCgGUaCUG---GGcCG-CAGC- -5'
19099 3' -64 NC_004684.1 + 39311 0.66 0.373448
Target:  5'- -gCGGGuCGCGCgGcGGCCCGGCc--- -3'
miRNA:   3'- ugGCCC-GCGCGgUaCUGGGCCGcagc -5'
19099 3' -64 NC_004684.1 + 4504 0.66 0.373448
Target:  5'- cGCCGagcuGGCG-GCCAccgugGACCCGGgGUUc -3'
miRNA:   3'- -UGGC----CCGCgCGGUa----CUGGGCCgCAGc -5'
19099 3' -64 NC_004684.1 + 55940 0.66 0.373448
Target:  5'- gACCGuGGUGCGCgucGGCCCGGUcagcuccggGUUGg -3'
miRNA:   3'- -UGGC-CCGCGCGguaCUGGGCCG---------CAGC- -5'
19099 3' -64 NC_004684.1 + 64238 0.66 0.373448
Target:  5'- cAUCaGGCGCaggaacugcaCCGUGAcCCCGGCGUaCGg -3'
miRNA:   3'- -UGGcCCGCGc---------GGUACU-GGGCCGCA-GC- -5'
19099 3' -64 NC_004684.1 + 51142 0.66 0.365397
Target:  5'- cACCGGGCGaGCgAcguaauggGAUgCGGCGUCc -3'
miRNA:   3'- -UGGCCCGCgCGgUa-------CUGgGCCGCAGc -5'
19099 3' -64 NC_004684.1 + 2401 0.66 0.365397
Target:  5'- cGCCGcuGGCGaGCCGcaGACCC-GCGUCGc -3'
miRNA:   3'- -UGGC--CCGCgCGGUa-CUGGGcCGCAGC- -5'
19099 3' -64 NC_004684.1 + 11208 0.66 0.365397
Target:  5'- cACCGGGCGCucgauagcgccGCCGUcGuCgCCGuCGUCGg -3'
miRNA:   3'- -UGGCCCGCG-----------CGGUA-CuG-GGCcGCAGC- -5'
19099 3' -64 NC_004684.1 + 36507 0.66 0.365396
Target:  5'- gGCCGGGaCGCugaGCC-UGGgCaCGGCGuUCGg -3'
miRNA:   3'- -UGGCCC-GCG---CGGuACUgG-GCCGC-AGC- -5'
19099 3' -64 NC_004684.1 + 7692 0.66 0.365396
Target:  5'- aACCGGGCauuccaggccGuCGCCGUGGCgCUGGCcGUg- -3'
miRNA:   3'- -UGGCCCG----------C-GCGGUACUG-GGCCG-CAgc -5'
19099 3' -64 NC_004684.1 + 9534 0.66 0.365396
Target:  5'- gACCGcgagcuGGUGCGCCGguugGAgCCGGUG-CGc -3'
miRNA:   3'- -UGGC------CCGCGCGGUa---CUgGGCCGCaGC- -5'
19099 3' -64 NC_004684.1 + 3485 0.66 0.365396
Target:  5'- cGCCGGGcCGCaCCGUGGCCgccaGGaCGcCGc -3'
miRNA:   3'- -UGGCCC-GCGcGGUACUGGg---CC-GCaGC- -5'
19099 3' -64 NC_004684.1 + 64559 0.66 0.365396
Target:  5'- gACCGGGUugguGCGCaggauCGUGuaccgGCCCGGUacGUCGa -3'
miRNA:   3'- -UGGCCCG----CGCG-----GUAC-----UGGGCCG--CAGC- -5'
19099 3' -64 NC_004684.1 + 62811 0.66 0.364598
Target:  5'- cACCGGGUggcgagugcagcaGCGCCucgAUGGCCuCGGCa--- -3'
miRNA:   3'- -UGGCCCG-------------CGCGG---UACUGG-GCCGcagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.