miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19099 3' -64 NC_004684.1 + 9065 1.07 0.00034
Target:  5'- cACCGGGCGCGCCAUGACCCGGCGUCGc -3'
miRNA:   3'- -UGGCCCGCGCGGUACUGGGCCGCAGC- -5'
19099 3' -64 NC_004684.1 + 19551 0.84 0.017176
Target:  5'- cGCCGGGCgGUGCCAggucuccgGGCCUGGCGUCGu -3'
miRNA:   3'- -UGGCCCG-CGCGGUa-------CUGGGCCGCAGC- -5'
19099 3' -64 NC_004684.1 + 16205 0.83 0.02139
Target:  5'- gGCCaGGGCGCGCggucCAUGGCCCGGCGcaUCGg -3'
miRNA:   3'- -UGG-CCCGCGCG----GUACUGGGCCGC--AGC- -5'
19099 3' -64 NC_004684.1 + 26044 0.82 0.028117
Target:  5'- aACCGGGUG-GCCuUGGCCCGGcCGUCGg -3'
miRNA:   3'- -UGGCCCGCgCGGuACUGGGCC-GCAGC- -5'
19099 3' -64 NC_004684.1 + 45685 0.8 0.040054
Target:  5'- gACCGGGUagGCcgaGCCAUGACCaCGGUGUCGc -3'
miRNA:   3'- -UGGCCCG--CG---CGGUACUGG-GCCGCAGC- -5'
19099 3' -64 NC_004684.1 + 54380 0.79 0.044278
Target:  5'- aACCGGGCGCGUCGgggGacauaauccacccgGCCCGGCGcUCGg -3'
miRNA:   3'- -UGGCCCGCGCGGUa--C--------------UGGGCCGC-AGC- -5'
19099 3' -64 NC_004684.1 + 29752 0.79 0.047121
Target:  5'- gACCGGGCG-GCCAUGGCCagcgcaccgaCGGCGuUCGg -3'
miRNA:   3'- -UGGCCCGCgCGGUACUGG----------GCCGC-AGC- -5'
19099 3' -64 NC_004684.1 + 54073 0.76 0.070324
Target:  5'- uACCGGGUGCG--GUGACCCgggucaaGGCGUCGg -3'
miRNA:   3'- -UGGCCCGCGCggUACUGGG-------CCGCAGC- -5'
19099 3' -64 NC_004684.1 + 46117 0.75 0.082497
Target:  5'- gGCCGGGCGCgcguGCCGgggugguUGACCUGGCG-Ca -3'
miRNA:   3'- -UGGCCCGCG----CGGU-------ACUGGGCCGCaGc -5'
19099 3' -64 NC_004684.1 + 64947 0.75 0.082716
Target:  5'- cGCCuGGCGgGCgGUGGCCCGGUucagGUCGa -3'
miRNA:   3'- -UGGcCCGCgCGgUACUGGGCCG----CAGC- -5'
19099 3' -64 NC_004684.1 + 20237 0.75 0.082716
Target:  5'- cGCCuGGCGCGCCGguacuacuuccGGCCCGGCG-CGu -3'
miRNA:   3'- -UGGcCCGCGCGGUa----------CUGGGCCGCaGC- -5'
19099 3' -64 NC_004684.1 + 41826 0.75 0.086069
Target:  5'- uCCGGGUagcgcaccuuccaccGCGCCGaggcucuugagcaccGACCCGGCGUCGg -3'
miRNA:   3'- uGGCCCG---------------CGCGGUa--------------CUGGGCCGCAGC- -5'
19099 3' -64 NC_004684.1 + 34187 0.75 0.087215
Target:  5'- cGCCGGGCuguccguCGCCAUGGCCaCGGUGaCGa -3'
miRNA:   3'- -UGGCCCGc------GCGGUACUGG-GCCGCaGC- -5'
19099 3' -64 NC_004684.1 + 55553 0.75 0.08955
Target:  5'- cGCCGcuGGC-CGCCGUGGCCCGGUGgcCGg -3'
miRNA:   3'- -UGGC--CCGcGCGGUACUGGGCCGCa-GC- -5'
19099 3' -64 NC_004684.1 + 63220 0.75 0.094401
Target:  5'- cGCCGGGCGCaaccggGCCAUGAucgcguCCaCGGUGUCc -3'
miRNA:   3'- -UGGCCCGCG------CGGUACU------GG-GCCGCAGc -5'
19099 3' -64 NC_004684.1 + 25109 0.75 0.094401
Target:  5'- uGCUGGGCGUGCUGgauuGCCCaGGUGUCGg -3'
miRNA:   3'- -UGGCCCGCGCGGUac--UGGG-CCGCAGC- -5'
19099 3' -64 NC_004684.1 + 58326 0.74 0.099501
Target:  5'- cGCCGggucauGGCGCGCCcgGUGGCCCugcuGGCGUUGc -3'
miRNA:   3'- -UGGC------CCGCGCGG--UACUGGG----CCGCAGC- -5'
19099 3' -64 NC_004684.1 + 47059 0.74 0.107358
Target:  5'- cACCGGGCGaCGCCGaucucgaUGGCCgccgccgccaUGGUGUCGg -3'
miRNA:   3'- -UGGCCCGC-GCGGU-------ACUGG----------GCCGCAGC- -5'
19099 3' -64 NC_004684.1 + 3167 0.73 0.113407
Target:  5'- gGCCGaGGCcaaCGCCGUGuCCCaGGUGUCGa -3'
miRNA:   3'- -UGGC-CCGc--GCGGUACuGGG-CCGCAGC- -5'
19099 3' -64 NC_004684.1 + 59512 0.73 0.113407
Target:  5'- cACCGGGCGCGUCGUaGGCCUGcGCacagGUCc -3'
miRNA:   3'- -UGGCCCGCGCGGUA-CUGGGC-CG----CAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.