miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19099 3' -64 NC_004684.1 + 4983 0.66 0.357466
Target:  5'- cACCugGGGCaGCGCgAgggcaagGGCCCGGUGcCGc -3'
miRNA:   3'- -UGG--CCCG-CGCGgUa------CUGGGCCGCaGC- -5'
19099 3' -64 NC_004684.1 + 28887 0.66 0.357465
Target:  5'- cACCGaacGGCGCGCCGUGGCgaCCGcCGcugaUCGa -3'
miRNA:   3'- -UGGC---CCGCGCGGUACUG--GGCcGC----AGC- -5'
19099 3' -64 NC_004684.1 + 26323 0.66 0.357465
Target:  5'- cGCCGGGC-CGCCGauugccGACgCGGUGcgcUCGg -3'
miRNA:   3'- -UGGCCCGcGCGGUa-----CUGgGCCGC---AGC- -5'
19099 3' -64 NC_004684.1 + 8175 0.66 0.357465
Target:  5'- cGCCggGGGCGCGCUG-GGCCaGGCG-Ca -3'
miRNA:   3'- -UGG--CCCGCGCGGUaCUGGgCCGCaGc -5'
19099 3' -64 NC_004684.1 + 58390 0.66 0.357465
Target:  5'- cACCGcGCGUggagGCCuUGGCCCGGcCGcCGg -3'
miRNA:   3'- -UGGCcCGCG----CGGuACUGGGCC-GCaGC- -5'
19099 3' -64 NC_004684.1 + 63903 0.66 0.349656
Target:  5'- uCCuGGCG-GCCAcggugcGGCCCGGCGUgGc -3'
miRNA:   3'- uGGcCCGCgCGGUa-----CUGGGCCGCAgC- -5'
19099 3' -64 NC_004684.1 + 12887 0.66 0.349656
Target:  5'- cGCCGGGgagccugcgcuCGcCGCCAgcgGugCCGGUgcgccGUCGg -3'
miRNA:   3'- -UGGCCC-----------GC-GCGGUa--CugGGCCG-----CAGC- -5'
19099 3' -64 NC_004684.1 + 22275 0.66 0.349656
Target:  5'- cGCCuGGCgGCgGCCAaGGCCCGcGCGgCGg -3'
miRNA:   3'- -UGGcCCG-CG-CGGUaCUGGGC-CGCaGC- -5'
19099 3' -64 NC_004684.1 + 44183 0.66 0.341969
Target:  5'- cCCGGcGCGCGCCAgcACCucgCGGUacuuGUCGa -3'
miRNA:   3'- uGGCC-CGCGCGGUacUGG---GCCG----CAGC- -5'
19099 3' -64 NC_004684.1 + 64434 0.66 0.341969
Target:  5'- cCCGcaacagcaGCGCGCCgAUGGCCuCGGUGcUCGg -3'
miRNA:   3'- uGGCc-------CGCGCGG-UACUGG-GCCGC-AGC- -5'
19099 3' -64 NC_004684.1 + 42534 0.66 0.341969
Target:  5'- -aUGGGgGUGCCGaacGGCCCGGUGgCGc -3'
miRNA:   3'- ugGCCCgCGCGGUa--CUGGGCCGCaGC- -5'
19099 3' -64 NC_004684.1 + 14826 0.67 0.334404
Target:  5'- gUgGGGCGCGCCGUGGu---GCGUCGc -3'
miRNA:   3'- uGgCCCGCGCGGUACUgggcCGCAGC- -5'
19099 3' -64 NC_004684.1 + 40706 0.67 0.333655
Target:  5'- aGCUGGGCG-GCgGUGGCCgggacgaccagcgCGGCGggggCGg -3'
miRNA:   3'- -UGGCCCGCgCGgUACUGG-------------GCCGCa---GC- -5'
19099 3' -64 NC_004684.1 + 2150 0.67 0.326963
Target:  5'- ---cGGCGCGUCgGUGaACUCGGCGUUGa -3'
miRNA:   3'- uggcCCGCGCGG-UAC-UGGGCCGCAGC- -5'
19099 3' -64 NC_004684.1 + 62806 0.67 0.326963
Target:  5'- uGCCGGGCagGCGggggagcuuUCAggccGACCgGGUGUCGg -3'
miRNA:   3'- -UGGCCCG--CGC---------GGUa---CUGGgCCGCAGC- -5'
19099 3' -64 NC_004684.1 + 5463 0.67 0.326963
Target:  5'- cCCGGcGgGUGCCGUGGCCCGcaccccGCGa-- -3'
miRNA:   3'- uGGCC-CgCGCGGUACUGGGC------CGCagc -5'
19099 3' -64 NC_004684.1 + 33718 0.67 0.326963
Target:  5'- aGCgCGGugguggugcacaGCGaCGCCAUG-CCCGGCGagGg -3'
miRNA:   3'- -UG-GCC------------CGC-GCGGUACuGGGCCGCagC- -5'
19099 3' -64 NC_004684.1 + 15524 0.67 0.319645
Target:  5'- gGCCGGGCGCuggagGCgcUGAUCC-GCGUUGg -3'
miRNA:   3'- -UGGCCCGCG-----CGguACUGGGcCGCAGC- -5'
19099 3' -64 NC_004684.1 + 39115 0.67 0.319645
Target:  5'- gACCGGGUaCGCCu--GCgCGGgGUCGg -3'
miRNA:   3'- -UGGCCCGcGCGGuacUGgGCCgCAGC- -5'
19099 3' -64 NC_004684.1 + 60060 0.67 0.319645
Target:  5'- cUCGuGGCGCGC---GGCCCGGCGgcccgugCGg -3'
miRNA:   3'- uGGC-CCGCGCGguaCUGGGCCGCa------GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.