miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19099 5' -48.7 NC_004684.1 + 29952 0.66 0.982842
Target:  5'- uGUCgGUCACCuccGGUGccaccaccGUGGCGGUgUCGa -3'
miRNA:   3'- -CAG-UAGUGGu--CCAC--------UACUGUCAaAGC- -5'
19099 5' -48.7 NC_004684.1 + 48113 0.66 0.97961
Target:  5'- -cCGUCGCCAGGUGGcuccggcuccggcGGCAGggcaUCGa -3'
miRNA:   3'- caGUAGUGGUCCACUa------------CUGUCaa--AGC- -5'
19099 5' -48.7 NC_004684.1 + 45583 0.66 0.978095
Target:  5'- uUCAUCGCgCGGGUGGagccgGACAGg---- -3'
miRNA:   3'- cAGUAGUG-GUCCACUa----CUGUCaaagc -5'
19099 5' -48.7 NC_004684.1 + 23377 0.66 0.978095
Target:  5'- cGUUGcUCGCCAGGUGuucGACGGgUUCc -3'
miRNA:   3'- -CAGU-AGUGGUCCACua-CUGUCaAAGc -5'
19099 5' -48.7 NC_004684.1 + 60981 0.66 0.975387
Target:  5'- -gCGUCgGCCucgguGGUGAUGACGGUg--- -3'
miRNA:   3'- caGUAG-UGGu----CCACUACUGUCAaagc -5'
19099 5' -48.7 NC_004684.1 + 19260 0.67 0.965805
Target:  5'- aUCAUCACCGGGccGAccggGACGGUg--- -3'
miRNA:   3'- cAGUAGUGGUCCa-CUa---CUGUCAaagc -5'
19099 5' -48.7 NC_004684.1 + 32544 0.67 0.958116
Target:  5'- cGUUcgCGCCGGGcGAUGACcuggAGaUUCGg -3'
miRNA:   3'- -CAGuaGUGGUCCaCUACUG----UCaAAGC- -5'
19099 5' -48.7 NC_004684.1 + 4060 0.68 0.949319
Target:  5'- -cCAUCGCCGGGUGAccgggugGugGGacugUCGa -3'
miRNA:   3'- caGUAGUGGUCCACUa------CugUCaa--AGC- -5'
19099 5' -48.7 NC_004684.1 + 34851 0.68 0.939373
Target:  5'- gGUCAUCGCCcGGcgcgaacguugUGGUGGCGGUggccCGg -3'
miRNA:   3'- -CAGUAGUGGuCC-----------ACUACUGUCAaa--GC- -5'
19099 5' -48.7 NC_004684.1 + 20530 0.69 0.922248
Target:  5'- cGUCAUCGCCuGGGUGGgccaGGCA--UUCGu -3'
miRNA:   3'- -CAGUAGUGG-UCCACUa---CUGUcaAAGC- -5'
19099 5' -48.7 NC_004684.1 + 53757 0.7 0.895285
Target:  5'- ----aCACCgAGGUGGUGAUGGUggUCGg -3'
miRNA:   3'- caguaGUGG-UCCACUACUGUCAa-AGC- -5'
19099 5' -48.7 NC_004684.1 + 28099 0.71 0.837416
Target:  5'- -cCcgCACCGGGUGGUG-CGGU-UCGa -3'
miRNA:   3'- caGuaGUGGUCCACUACuGUCAaAGC- -5'
19099 5' -48.7 NC_004684.1 + 58293 0.85 0.215307
Target:  5'- uGUCAUCACCuGGUGAUGACAGc-UCa -3'
miRNA:   3'- -CAGUAGUGGuCCACUACUGUCaaAGc -5'
19099 5' -48.7 NC_004684.1 + 9101 1.1 0.005031
Target:  5'- uGUCAUCACCAGGUGAUGACAGUUUCGa -3'
miRNA:   3'- -CAGUAGUGGUCCACUACUGUCAAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.