miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 3' -58 NC_004684.1 + 65532 0.67 0.535758
Target:  5'- ---cGGCCAggUGGAUAuGcGGCCCGGCGu -3'
miRNA:   3'- ucguUCGGU--GCCUAU-CuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 65816 0.67 0.525359
Target:  5'- gGGCAGGUgACcc--GGAGGCaCCGGCGg -3'
miRNA:   3'- -UCGUUCGgUGccuaUCUCCG-GGUCGC- -5'
19100 3' -58 NC_004684.1 + 8945 0.67 0.525358
Target:  5'- cAGCGGGCagucggguccggCACGGGgccGGAGGCaaCGGCGg -3'
miRNA:   3'- -UCGUUCG------------GUGCCUa--UCUCCGg-GUCGC- -5'
19100 3' -58 NC_004684.1 + 18027 0.67 0.515036
Target:  5'- cGGCAAgGCCAUGGAcAGccuGGGCCUgaucccgucAGCGc -3'
miRNA:   3'- -UCGUU-CGGUGCCUaUC---UCCGGG---------UCGC- -5'
19100 3' -58 NC_004684.1 + 63851 0.68 0.494647
Target:  5'- cGCugucgguGCCACGugcgcGGUGGcggccuucaucGGGCCCAGCGg -3'
miRNA:   3'- uCGuu-----CGGUGC-----CUAUC-----------UCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 9893 0.68 0.494647
Target:  5'- gAGCAGGCCGCcGAcgAGuGGUCCGGg- -3'
miRNA:   3'- -UCGUUCGGUGcCUa-UCuCCGGGUCgc -5'
19100 3' -58 NC_004684.1 + 33695 0.68 0.48459
Target:  5'- cGCu-GCCGCuGGcgAGGGuGUCCAGCGc -3'
miRNA:   3'- uCGuuCGGUG-CCuaUCUC-CGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 2978 0.68 0.48459
Target:  5'- cGGguGGCCaACGGGUuGAGGCCaucaccGCGc -3'
miRNA:   3'- -UCguUCGG-UGCCUAuCUCCGGgu----CGC- -5'
19100 3' -58 NC_004684.1 + 47097 0.68 0.48459
Target:  5'- cGGCGGuGCCG-GGAcgcGGGGGUCCGGCa -3'
miRNA:   3'- -UCGUU-CGGUgCCUa--UCUCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 12663 0.68 0.474632
Target:  5'- cGCGAGCUGCGcucgcuGGUGGAGGCCgacgaGGCc -3'
miRNA:   3'- uCGUUCGGUGC------CUAUCUCCGGg----UCGc -5'
19100 3' -58 NC_004684.1 + 64930 0.68 0.445396
Target:  5'- cAGguGGCgGCGGu--GAGcGCCUGGCGg -3'
miRNA:   3'- -UCguUCGgUGCCuauCUC-CGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 16204 0.68 0.445396
Target:  5'- cGGCcaGGGCgCGCGGuccauGGCCCGGCGc -3'
miRNA:   3'- -UCG--UUCG-GUGCCuaucuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 262 0.68 0.445396
Target:  5'- uGCAGGCCgACGGc--GAGGCCUucguGCa -3'
miRNA:   3'- uCGUUCGG-UGCCuauCUCCGGGu---CGc -5'
19100 3' -58 NC_004684.1 + 43413 0.69 0.435876
Target:  5'- cGCc-GCCGCcGAacccGAGGCCCGGCGa -3'
miRNA:   3'- uCGuuCGGUGcCUau--CUCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 66515 0.69 0.426475
Target:  5'- cGCGGGCCGCcuucAGcgcGGCCCGGCGg -3'
miRNA:   3'- uCGUUCGGUGccuaUCu--CCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 27536 0.69 0.406223
Target:  5'- uGCGcAGCCGCcugcuGGAgcuaaucgacuaGGAGGCCCGGUGg -3'
miRNA:   3'- uCGU-UCGGUG-----CCUa-----------UCUCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 18760 0.7 0.390109
Target:  5'- cGCAucugGGCCugGGA-AGAGGCgCaCGGCa -3'
miRNA:   3'- uCGU----UCGGugCCUaUCUCCG-G-GUCGc -5'
19100 3' -58 NC_004684.1 + 43617 0.7 0.38134
Target:  5'- cAGCccGGCCACGGu--GuGGCCgAGCGc -3'
miRNA:   3'- -UCGu-UCGGUGCCuauCuCCGGgUCGC- -5'
19100 3' -58 NC_004684.1 + 28101 0.7 0.38134
Target:  5'- aGGCGAGCUGCaccgagucGAUAGAGGCgcugaaCCGGCGu -3'
miRNA:   3'- -UCGUUCGGUGc-------CUAUCUCCG------GGUCGC- -5'
19100 3' -58 NC_004684.1 + 52240 0.7 0.370138
Target:  5'- cGGCGgcGGCCAgcugcgcgcuggcgUGGAUc-AGGCCCAGCGu -3'
miRNA:   3'- -UCGU--UCGGU--------------GCCUAucUCCGGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.