miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 54279 0.67 0.633136
Target:  5'- cGCCGCCACccGGCCGggggugCGcgCAucGGCc -3'
miRNA:   3'- -CGGCGGUGc-CCGGCa-----GCuaGUu-UCGu -5'
19100 5' -57.3 NC_004684.1 + 10499 0.67 0.601111
Target:  5'- gGCCGaCgCACuGGGCCGccgaCGGUCAgcGCGc -3'
miRNA:   3'- -CGGC-G-GUG-CCCGGCa---GCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 62306 0.67 0.590475
Target:  5'- cGCCG-CGCGGGCCuccgCGAUCucaucgccgGAGGCc -3'
miRNA:   3'- -CGGCgGUGCCCGGca--GCUAG---------UUUCGu -5'
19100 5' -57.3 NC_004684.1 + 10160 0.67 0.590475
Target:  5'- aGCCGCCGCuGGCCaccgCGcUCGAGGa- -3'
miRNA:   3'- -CGGCGGUGcCCGGca--GCuAGUUUCgu -5'
19100 5' -57.3 NC_004684.1 + 24775 0.67 0.579872
Target:  5'- aCCGgCAcCGGGCCGcuggUCGAUacggcCAAGGCGg -3'
miRNA:   3'- cGGCgGU-GCCCGGC----AGCUA-----GUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 13552 0.67 0.633136
Target:  5'- -gCGCCugGcGGCCaUCGGcuacugcgUCGAGGCGg -3'
miRNA:   3'- cgGCGGugC-CCGGcAGCU--------AGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 48346 0.67 0.611772
Target:  5'- cGCUGgauCCACGGGCgGUC--UCGGAGUg -3'
miRNA:   3'- -CGGC---GGUGCCCGgCAGcuAGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 21567 0.66 0.643821
Target:  5'- aCCGCCGa-GGCCGUCaccgGGUCAAugccGCAc -3'
miRNA:   3'- cGGCGGUgcCCGGCAG----CUAGUUu---CGU- -5'
19100 5' -57.3 NC_004684.1 + 63986 0.66 0.643821
Target:  5'- cGgUGCCAgGGuGCCGUUGGUCucgauguGCAc -3'
miRNA:   3'- -CgGCGGUgCC-CGGCAGCUAGuuu----CGU- -5'
19100 5' -57.3 NC_004684.1 + 67061 0.66 0.643821
Target:  5'- cCCGCCAacaccucguUGGGCCGccCGGUCuuGGUc -3'
miRNA:   3'- cGGCGGU---------GCCCGGCa-GCUAGuuUCGu -5'
19100 5' -57.3 NC_004684.1 + 47235 0.66 0.643821
Target:  5'- cGCCGCaagggcCGGGCCGUCaccggCGAAGa- -3'
miRNA:   3'- -CGGCGgu----GCCCGGCAGcua--GUUUCgu -5'
19100 5' -57.3 NC_004684.1 + 47606 0.66 0.675777
Target:  5'- gGCCGCaCACc-GCCGUCGGUaCucGGCGu -3'
miRNA:   3'- -CGGCG-GUGccCGGCAGCUA-GuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3602 0.66 0.675777
Target:  5'- cGUCGCgCACuGGGCCGcCGAacacgaguggcCGAAGCGc -3'
miRNA:   3'- -CGGCG-GUG-CCCGGCaGCUa----------GUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 60354 0.66 0.665151
Target:  5'- uCgGCCAgCGGuGCCagGUCGGUCAGguugGGCAu -3'
miRNA:   3'- cGgCGGU-GCC-CGG--CAGCUAGUU----UCGU- -5'
19100 5' -57.3 NC_004684.1 + 50588 0.66 0.665151
Target:  5'- aGCCuauGCCGuCGGGUCGgCGGUC--GGCGg -3'
miRNA:   3'- -CGG---CGGU-GCCCGGCaGCUAGuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 42415 0.66 0.661957
Target:  5'- cGCCGaCGCGGGCCaagGUaugggcaggacuggCGGUCAucGCGc -3'
miRNA:   3'- -CGGCgGUGCCCGG---CA--------------GCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 45091 0.66 0.654495
Target:  5'- cGCCGCCAgGaGGCCGacuugUCGuUgAAGGUg -3'
miRNA:   3'- -CGGCGGUgC-CCGGC-----AGCuAgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 36761 0.66 0.654495
Target:  5'- cGCCGCCA-GGGCCGcgccCGGUgcCGAcGCu -3'
miRNA:   3'- -CGGCGGUgCCCGGCa---GCUA--GUUuCGu -5'
19100 5' -57.3 NC_004684.1 + 55560 0.66 0.643821
Target:  5'- gGCCGCCGuggccCGguGGCCGggGGUCcAGGCAc -3'
miRNA:   3'- -CGGCGGU-----GC--CCGGCagCUAGuUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 4013 0.66 0.686364
Target:  5'- cGCCGCCAuCGgcuggcgcgucGGCCGcUCGGUgCGcuGGGCGg -3'
miRNA:   3'- -CGGCGGU-GC-----------CCGGC-AGCUA-GU--UUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.