Results 41 - 60 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 51119 | 0.68 | 0.537941 |
Target: 5'- cGCCGCguCGGGCCcGgcgCGAaCAccGGGCGa -3' miRNA: 3'- -CGGCGguGCCCGG-Ca--GCUaGU--UUCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 3519 | 0.68 | 0.548337 |
Target: 5'- aUCGCCGacgggUGGGCCGaccuggCGGUgCAAGGCAa -3' miRNA: 3'- cGGCGGU-----GCCCGGCa-----GCUA-GUUUCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 53629 | 0.68 | 0.557748 |
Target: 5'- gGUCGCCugGagcgccaGGCCGUUGAgcacCGAGGUg -3' miRNA: 3'- -CGGCGGugC-------CCGGCAGCUa---GUUUCGu -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 26315 | 0.68 | 0.558796 |
Target: 5'- gGCCagGCCGcCGGGCCGcCGAUugcCGAcGCGg -3' miRNA: 3'- -CGG--CGGU-GCCCGGCaGCUA---GUUuCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 39883 | 0.68 | 0.558796 |
Target: 5'- aGCuCGCC-CaGGCCGUCGGUguAgucGGCGg -3' miRNA: 3'- -CG-GCGGuGcCCGGCAGCUAguU---UCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 28086 | 0.68 | 0.56931 |
Target: 5'- gGCCGCCGCgcgacccgcaccGGGUgGUgCGGUuCGAGGCc -3' miRNA: 3'- -CGGCGGUG------------CCCGgCA-GCUA-GUUUCGu -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 7971 | 0.68 | 0.56931 |
Target: 5'- gGCCGCCAgGcGGCCGU-GcgCAAcaccuGCAa -3' miRNA: 3'- -CGGCGGUgC-CCGGCAgCuaGUUu----CGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 24775 | 0.67 | 0.579872 |
Target: 5'- aCCGgCAcCGGGCCGcuggUCGAUacggcCAAGGCGg -3' miRNA: 3'- cGGCgGU-GCCCGGC----AGCUA-----GUUUCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 44381 | 0.67 | 0.589413 |
Target: 5'- cGCUGCCgacgGCGgccagucggcccaGGCCGUUGAUCAGcgguucgauGGCGg -3' miRNA: 3'- -CGGCGG----UGC-------------CCGGCAGCUAGUU---------UCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 62306 | 0.67 | 0.590475 |
Target: 5'- cGCCG-CGCGGGCCuccgCGAUCucaucgccgGAGGCc -3' miRNA: 3'- -CGGCgGUGCCCGGca--GCUAG---------UUUCGu -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 48972 | 0.67 | 0.590475 |
Target: 5'- gGCCGCCGgugcgcccgcCGGGCCGcCGAagu-AGUAg -3' miRNA: 3'- -CGGCGGU----------GCCCGGCaGCUaguuUCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 10160 | 0.67 | 0.590475 |
Target: 5'- aGCCGCCGCuGGCCaccgCGcUCGAGGa- -3' miRNA: 3'- -CGGCGGUGcCCGGca--GCuAGUUUCgu -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 862 | 0.67 | 0.600046 |
Target: 5'- aCCGCCGugcccgcCGGGCCG-CGcUgAAGGCGg -3' miRNA: 3'- cGGCGGU-------GCCCGGCaGCuAgUUUCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 42080 | 0.67 | 0.601111 |
Target: 5'- cGCCGCCA-GGGCCGaCGAacCGccGCc -3' miRNA: 3'- -CGGCGGUgCCCGGCaGCUa-GUuuCGu -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 10499 | 0.67 | 0.601111 |
Target: 5'- gGCCGaCgCACuGGGCCGccgaCGGUCAgcGCGc -3' miRNA: 3'- -CGGC-G-GUG-CCCGGCa---GCUAGUuuCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 45311 | 0.67 | 0.601111 |
Target: 5'- aGCCGUCGCu-GCCGUUGAUgAAcGGCAc -3' miRNA: 3'- -CGGCGGUGccCGGCAGCUAgUU-UCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 732 | 0.67 | 0.601111 |
Target: 5'- aCCGCCGgugacCGGGCCGcCGc-CGAGGCc -3' miRNA: 3'- cGGCGGU-----GCCCGGCaGCuaGUUUCGu -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 33884 | 0.67 | 0.602176 |
Target: 5'- aGCCGCCACcgcccgcgaguacaGGGCCGcCGccgcGUCcaccgcagccccgccGAGGCAg -3' miRNA: 3'- -CGGCGGUG--------------CCCGGCaGC----UAG---------------UUUCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 45107 | 0.67 | 0.611772 |
Target: 5'- cGCCGCCgcGCGGGCC-UUGGcCGccgccAGGCGg -3' miRNA: 3'- -CGGCGG--UGCCCGGcAGCUaGU-----UUCGU- -5' |
|||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 48346 | 0.67 | 0.611772 |
Target: 5'- cGCUGgauCCACGGGCgGUC--UCGGAGUg -3' miRNA: 3'- -CGGC---GGUGCCCGgCAGcuAGUUUCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home