miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 26949 0.67 0.62245
Target:  5'- gGCCGCCugGGcaCCGcUGAcCAAGGCc -3'
miRNA:   3'- -CGGCGGugCCc-GGCaGCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 13090 0.67 0.62245
Target:  5'- aGCCGCCAaggGGGCCGaugCGcgCAcccccGGCc -3'
miRNA:   3'- -CGGCGGUg--CCCGGCa--GCuaGUu----UCGu -5'
19100 5' -57.3 NC_004684.1 + 54279 0.67 0.633136
Target:  5'- cGCCGCCACccGGCCGggggugCGcgCAucGGCc -3'
miRNA:   3'- -CGGCGGUGc-CCGGCa-----GCuaGUu-UCGu -5'
19100 5' -57.3 NC_004684.1 + 55740 0.67 0.633136
Target:  5'- gGCCGCCgugcugGCGuGGCCGaugccgaCGGUCA-GGCGg -3'
miRNA:   3'- -CGGCGG------UGC-CCGGCa------GCUAGUuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3652 0.67 0.633136
Target:  5'- gGCCGCC-CGGuGCCG--GGUCAucGUAc -3'
miRNA:   3'- -CGGCGGuGCC-CGGCagCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 13552 0.67 0.633136
Target:  5'- -gCGCCugGcGGCCaUCGGcuacugcgUCGAGGCGg -3'
miRNA:   3'- cgGCGGugC-CCGGcAGCU--------AGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 6745 0.67 0.633136
Target:  5'- gGCUgGCC-CGGaGCCGUCGGgugcaCGAAGUg -3'
miRNA:   3'- -CGG-CGGuGCC-CGGCAGCUa----GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 47235 0.66 0.643821
Target:  5'- cGCCGCaagggcCGGGCCGUCaccggCGAAGa- -3'
miRNA:   3'- -CGGCGgu----GCCCGGCAGcua--GUUUCgu -5'
19100 5' -57.3 NC_004684.1 + 67061 0.66 0.643821
Target:  5'- cCCGCCAacaccucguUGGGCCGccCGGUCuuGGUc -3'
miRNA:   3'- cGGCGGU---------GCCCGGCa-GCUAGuuUCGu -5'
19100 5' -57.3 NC_004684.1 + 21567 0.66 0.643821
Target:  5'- aCCGCCGa-GGCCGUCaccgGGUCAAugccGCAc -3'
miRNA:   3'- cGGCGGUgcCCGGCAG----CUAGUUu---CGU- -5'
19100 5' -57.3 NC_004684.1 + 12450 0.66 0.643821
Target:  5'- --gGCUGCGGGCCGgggagcaaUCGAcCGAGGUAc -3'
miRNA:   3'- cggCGGUGCCCGGC--------AGCUaGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 63986 0.66 0.643821
Target:  5'- cGgUGCCAgGGuGCCGUUGGUCucgauguGCAc -3'
miRNA:   3'- -CgGCGGUgCC-CGGCAGCUAGuuu----CGU- -5'
19100 5' -57.3 NC_004684.1 + 55560 0.66 0.643821
Target:  5'- gGCCGCCGuggccCGguGGCCGggGGUCcAGGCAc -3'
miRNA:   3'- -CGGCGGU-----GC--CCGGCagCUAGuUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 7331 0.66 0.654495
Target:  5'- gGCCGCC--GGGCCGcgcgccaCGAgugCGAGGCc -3'
miRNA:   3'- -CGGCGGugCCCGGCa------GCUa--GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 36761 0.66 0.654495
Target:  5'- cGCCGCCA-GGGCCGcgccCGGUgcCGAcGCu -3'
miRNA:   3'- -CGGCGGUgCCCGGCa---GCUA--GUUuCGu -5'
19100 5' -57.3 NC_004684.1 + 45091 0.66 0.654495
Target:  5'- cGCCGCCAgGaGGCCGacuugUCGuUgAAGGUg -3'
miRNA:   3'- -CGGCGGUgC-CCGGC-----AGCuAgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 40233 0.66 0.658761
Target:  5'- cGCCGCCGuagcUGGugaucgaaucgcccaGCaCGUCGAUCAGcgucccGGCAa -3'
miRNA:   3'- -CGGCGGU----GCC---------------CG-GCAGCUAGUU------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 42415 0.66 0.661957
Target:  5'- cGCCGaCGCGGGCCaagGUaugggcaggacuggCGGUCAucGCGc -3'
miRNA:   3'- -CGGCgGUGCCCGG---CA--------------GCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 50588 0.66 0.665151
Target:  5'- aGCCuauGCCGuCGGGUCGgCGGUC--GGCGg -3'
miRNA:   3'- -CGG---CGGU-GCCCGGCaGCUAGuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 60354 0.66 0.665151
Target:  5'- uCgGCCAgCGGuGCCagGUCGGUCAGguugGGCAu -3'
miRNA:   3'- cGgCGGU-GCC-CGG--CAGCUAGUU----UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.