Results 81 - 88 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19100 | 5' | -57.3 | NC_004684.1 | + | 40662 | 0.66 | 0.665151 |
|
Target: 5'- gGgUGUCGCGGGCC-UCGAUUucgacgccGAGCAc -3' miRNA: 3'- -CgGCGGUGCCCGGcAGCUAGu-------UUCGU- -5' |
|||||||
| 19100 | 5' | -57.3 | NC_004684.1 | + | 38823 | 0.66 | 0.665151 |
|
Target: 5'- aGCCGCCgcacaccggugGCGGGgUGUUGGUgAccGCGa -3' miRNA: 3'- -CGGCGG-----------UGCCCgGCAGCUAgUuuCGU- -5' |
|||||||
| 19100 | 5' | -57.3 | NC_004684.1 | + | 60354 | 0.66 | 0.665151 |
|
Target: 5'- uCgGCCAgCGGuGCCagGUCGGUCAGguugGGCAu -3' miRNA: 3'- cGgCGGU-GCC-CGG--CAGCUAGUU----UCGU- -5' |
|||||||
| 19100 | 5' | -57.3 | NC_004684.1 | + | 518 | 0.66 | 0.666215 |
|
Target: 5'- gGUCGCCAcCGGcGCUGacgugcuggccagcgCGGUCGAGGCc -3' miRNA: 3'- -CGGCGGU-GCC-CGGCa--------------GCUAGUUUCGu -5' |
|||||||
| 19100 | 5' | -57.3 | NC_004684.1 | + | 47606 | 0.66 | 0.675777 |
|
Target: 5'- gGCCGCaCACc-GCCGUCGGUaCucGGCGu -3' miRNA: 3'- -CGGCG-GUGccCGGCAGCUA-GuuUCGU- -5' |
|||||||
| 19100 | 5' | -57.3 | NC_004684.1 | + | 3602 | 0.66 | 0.675777 |
|
Target: 5'- cGUCGCgCACuGGGCCGcCGAacacgaguggcCGAAGCGc -3' miRNA: 3'- -CGGCG-GUG-CCCGGCaGCUa----------GUUUCGU- -5' |
|||||||
| 19100 | 5' | -57.3 | NC_004684.1 | + | 66173 | 0.66 | 0.675777 |
|
Target: 5'- gGCCGCCGa-GGCCGaCGAagUCGAcGCc -3' miRNA: 3'- -CGGCGGUgcCCGGCaGCU--AGUUuCGu -5' |
|||||||
| 19100 | 5' | -57.3 | NC_004684.1 | + | 4013 | 0.66 | 0.686364 |
|
Target: 5'- cGCCGCCAuCGgcuggcgcgucGGCCGcUCGGUgCGcuGGGCGg -3' miRNA: 3'- -CGGCGGU-GC-----------CCGGC-AGCUA-GU--UUCGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home