miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 12905 0.69 0.476221
Target:  5'- cGCCGCCAgCGGugccggugcGCCGUCGGcCAAcuucgccgccgucGGCAc -3'
miRNA:   3'- -CGGCGGU-GCC---------CGGCAGCUaGUU-------------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 18672 0.69 0.467407
Target:  5'- uGCCGCCGCuGGGCgCGaCGGuaaccaUCAGccAGCAg -3'
miRNA:   3'- -CGGCGGUG-CCCG-GCaGCU------AGUU--UCGU- -5'
19100 5' -57.3 NC_004684.1 + 37162 0.69 0.467407
Target:  5'- aGCgCGCCGaGGGCCacGUCGcgCcGAGCAu -3'
miRNA:   3'- -CG-GCGGUgCCCGG--CAGCuaGuUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 28558 0.69 0.467407
Target:  5'- cGCCaggGCCACcaGGCCGUCGggCAccgccAGGCGg -3'
miRNA:   3'- -CGG---CGGUGc-CCGGCAGCuaGU-----UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 26976 0.69 0.467407
Target:  5'- cGCCGCCAUccaGGCCGgugCGAgCGcGGCGg -3'
miRNA:   3'- -CGGCGGUGc--CCGGCa--GCUaGUuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 53473 0.69 0.466432
Target:  5'- aGCCGCCAgccagcugucgauCuGGCCGUCGGUgAucGCc -3'
miRNA:   3'- -CGGCGGU-------------GcCCGGCAGCUAgUuuCGu -5'
19100 5' -57.3 NC_004684.1 + 15514 0.7 0.448127
Target:  5'- gGCCGCC-CgGGGCCGggCGcUgGAGGCGc -3'
miRNA:   3'- -CGGCGGuG-CCCGGCa-GCuAgUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3710 0.7 0.438654
Target:  5'- cGCCGCCGCGcuGGCCGgu-AUCAAcGCu -3'
miRNA:   3'- -CGGCGGUGC--CCGGCagcUAGUUuCGu -5'
19100 5' -57.3 NC_004684.1 + 48811 0.7 0.438654
Target:  5'- gGCCGCCguucuccaACaGGCCGUCGAUgAuguacuccggGGGCGg -3'
miRNA:   3'- -CGGCGG--------UGcCCGGCAGCUAgU----------UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 40631 0.7 0.429296
Target:  5'- aCCGCCGCGcGGCCGaCGAacuUgGGGGCc -3'
miRNA:   3'- cGGCGGUGC-CCGGCaGCU---AgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 58685 0.7 0.420057
Target:  5'- cGCCGCCAUGGaGUccuCGUCG-UCGuAGGCGg -3'
miRNA:   3'- -CGGCGGUGCC-CG---GCAGCuAGU-UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 65067 0.71 0.401053
Target:  5'- cGCCGCCaguucguccugcGCGGugaucauGCCGUCGAgCAGGGUg -3'
miRNA:   3'- -CGGCGG------------UGCC-------CGGCAGCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 39608 0.71 0.393077
Target:  5'- aCCGCCGCGcaCCGUCGggCGGGGUg -3'
miRNA:   3'- cGGCGGUGCccGGCAGCuaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 54578 0.71 0.393077
Target:  5'- aGCCGCCGuccuCGGGCgCGUCG-UC--GGCGg -3'
miRNA:   3'- -CGGCGGU----GCCCG-GCAGCuAGuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 66650 0.71 0.393077
Target:  5'- cGCCGCCA-GGG-CGUCGGugucgUCGGGGUAg -3'
miRNA:   3'- -CGGCGGUgCCCgGCAGCU-----AGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 65767 0.71 0.375728
Target:  5'- gGCCGCCGCGcGCCGgugggcgCGcgCAcGGCGa -3'
miRNA:   3'- -CGGCGGUGCcCGGCa------GCuaGUuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 39833 0.72 0.35069
Target:  5'- -aCGCCAcCGGGCCuccuaGUCGAUUAGcuccAGCAg -3'
miRNA:   3'- cgGCGGU-GCCCGG-----CAGCUAGUU----UCGU- -5'
19100 5' -57.3 NC_004684.1 + 66692 0.72 0.345827
Target:  5'- gGCCGuCCACcggcggcugaccucgGGGCCGagGAUCAGGcGCAc -3'
miRNA:   3'- -CGGC-GGUG---------------CCCGGCagCUAGUUU-CGU- -5'
19100 5' -57.3 NC_004684.1 + 56600 0.72 0.333881
Target:  5'- uGCCGCUACGGugccgacGCCGUCGcggguGUCGcGGGCAc -3'
miRNA:   3'- -CGGCGGUGCC-------CGGCAGC-----UAGU-UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 24869 0.72 0.326861
Target:  5'- cGCCGaCCACGGcggugagcgcGCCGUUGAUCGcguuGGCc -3'
miRNA:   3'- -CGGC-GGUGCC----------CGGCAGCUAGUu---UCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.