miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 37162 0.69 0.467407
Target:  5'- aGCgCGCCGaGGGCCacGUCGcgCcGAGCAu -3'
miRNA:   3'- -CG-GCGGUgCCCGG--CAGCuaGuUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 38823 0.66 0.665151
Target:  5'- aGCCGCCgcacaccggugGCGGGgUGUUGGUgAccGCGa -3'
miRNA:   3'- -CGGCGG-----------UGCCCgGCAGCUAgUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 39608 0.71 0.393077
Target:  5'- aCCGCCGCGcaCCGUCGggCGGGGUg -3'
miRNA:   3'- cGGCGGUGCccGGCAGCuaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 39833 0.72 0.35069
Target:  5'- -aCGCCAcCGGGCCuccuaGUCGAUUAGcuccAGCAg -3'
miRNA:   3'- cgGCGGU-GCCCGG-----CAGCUAGUU----UCGU- -5'
19100 5' -57.3 NC_004684.1 + 39883 0.68 0.558796
Target:  5'- aGCuCGCC-CaGGCCGUCGGUguAgucGGCGg -3'
miRNA:   3'- -CG-GCGGuGcCCGGCAGCUAguU---UCGU- -5'
19100 5' -57.3 NC_004684.1 + 40050 0.72 0.318429
Target:  5'- uGCCGgugcCCACGGcgauaccGCCGUCG-UCAAAGCu -3'
miRNA:   3'- -CGGC----GGUGCC-------CGGCAGCuAGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 40233 0.66 0.658761
Target:  5'- cGCCGCCGuagcUGGugaucgaaucgcccaGCaCGUCGAUCAGcgucccGGCAa -3'
miRNA:   3'- -CGGCGGU----GCC---------------CG-GCAGCUAGUU------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 40631 0.7 0.429296
Target:  5'- aCCGCCGCGcGGCCGaCGAacuUgGGGGCc -3'
miRNA:   3'- cGGCGGUGC-CCGGCaGCU---AgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 40662 0.66 0.665151
Target:  5'- gGgUGUCGCGGGCC-UCGAUUucgacgccGAGCAc -3'
miRNA:   3'- -CgGCGGUGCCCGGcAGCUAGu-------UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 42080 0.67 0.601111
Target:  5'- cGCCGCCA-GGGCCGaCGAacCGccGCc -3'
miRNA:   3'- -CGGCGGUgCCCGGCaGCUa-GUuuCGu -5'
19100 5' -57.3 NC_004684.1 + 42415 0.66 0.661957
Target:  5'- cGCCGaCGCGGGCCaagGUaugggcaggacuggCGGUCAucGCGc -3'
miRNA:   3'- -CGGCgGUGCCCGG---CA--------------GCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 44381 0.67 0.589413
Target:  5'- cGCUGCCgacgGCGgccagucggcccaGGCCGUUGAUCAGcgguucgauGGCGg -3'
miRNA:   3'- -CGGCGG----UGC-------------CCGGCAGCUAGUU---------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 45091 0.66 0.654495
Target:  5'- cGCCGCCAgGaGGCCGacuugUCGuUgAAGGUg -3'
miRNA:   3'- -CGGCGGUgC-CCGGC-----AGCuAgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 45107 0.67 0.611772
Target:  5'- cGCCGCCgcGCGGGCC-UUGGcCGccgccAGGCGg -3'
miRNA:   3'- -CGGCGG--UGCCCGGcAGCUaGU-----UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 45311 0.67 0.601111
Target:  5'- aGCCGUCGCu-GCCGUUGAUgAAcGGCAc -3'
miRNA:   3'- -CGGCGGUGccCGGCAGCUAgUU-UCGU- -5'
19100 5' -57.3 NC_004684.1 + 47235 0.66 0.643821
Target:  5'- cGCCGCaagggcCGGGCCGUCaccggCGAAGa- -3'
miRNA:   3'- -CGGCGgu----GCCCGGCAGcua--GUUUCgu -5'
19100 5' -57.3 NC_004684.1 + 47606 0.66 0.675777
Target:  5'- gGCCGCaCACc-GCCGUCGGUaCucGGCGu -3'
miRNA:   3'- -CGGCG-GUGccCGGCAGCUA-GuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 48346 0.67 0.611772
Target:  5'- cGCUGgauCCACGGGCgGUC--UCGGAGUg -3'
miRNA:   3'- -CGGC---GGUGCCCGgCAGcuAGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 48811 0.7 0.438654
Target:  5'- gGCCGCCguucuccaACaGGCCGUCGAUgAuguacuccggGGGCGg -3'
miRNA:   3'- -CGGCGG--------UGcCCGGCAGCUAgU----------UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 48972 0.67 0.590475
Target:  5'- gGCCGCCGgugcgcccgcCGGGCCGcCGAagu-AGUAg -3'
miRNA:   3'- -CGGCGGU----------GCCCGGCaGCUaguuUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.