Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 55305 | 0.73 | 0.304253 |
Target: 5'- gGCCGCCgcGCGGGCCagcaccucGUCGcgCucGGCGg -3' miRNA: 3'- -CGGCGG--UGCCCGG--------CAGCuaGuuUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 54578 | 0.71 | 0.393077 |
Target: 5'- aGCCGCCGuccuCGGGCgCGUCG-UC--GGCGg -3' miRNA: 3'- -CGGCGGU----GCCCG-GCAGCuAGuuUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 54279 | 0.67 | 0.633136 |
Target: 5'- cGCCGCCACccGGCCGggggugCGcgCAucGGCc -3' miRNA: 3'- -CGGCGGUGc-CCGGCa-----GCuaGUu-UCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 53629 | 0.68 | 0.557748 |
Target: 5'- gGUCGCCugGagcgccaGGCCGUUGAgcacCGAGGUg -3' miRNA: 3'- -CGGCGGugC-------CCGGCAGCUa---GUUUCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 53473 | 0.69 | 0.466432 |
Target: 5'- aGCCGCCAgccagcugucgauCuGGCCGUCGGUgAucGCc -3' miRNA: 3'- -CGGCGGU-------------GcCCGGCAGCUAgUuuCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 52313 | 0.68 | 0.536905 |
Target: 5'- gGCCaCCGCGccgauaaGGCCGUCGAccUCAuccGGCGu -3' miRNA: 3'- -CGGcGGUGC-------CCGGCAGCU--AGUu--UCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 51119 | 0.68 | 0.537941 |
Target: 5'- cGCCGCguCGGGCCcGgcgCGAaCAccGGGCGa -3' miRNA: 3'- -CGGCGguGCCCGG-Ca--GCUaGU--UUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 50588 | 0.66 | 0.665151 |
Target: 5'- aGCCuauGCCGuCGGGUCGgCGGUC--GGCGg -3' miRNA: 3'- -CGG---CGGU-GCCCGGCaGCUAGuuUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 48972 | 0.67 | 0.590475 |
Target: 5'- gGCCGCCGgugcgcccgcCGGGCCGcCGAagu-AGUAg -3' miRNA: 3'- -CGGCGGU----------GCCCGGCaGCUaguuUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 48811 | 0.7 | 0.438654 |
Target: 5'- gGCCGCCguucuccaACaGGCCGUCGAUgAuguacuccggGGGCGg -3' miRNA: 3'- -CGGCGG--------UGcCCGGCAGCUAgU----------UUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 48346 | 0.67 | 0.611772 |
Target: 5'- cGCUGgauCCACGGGCgGUC--UCGGAGUg -3' miRNA: 3'- -CGGC---GGUGCCCGgCAGcuAGUUUCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 47606 | 0.66 | 0.675777 |
Target: 5'- gGCCGCaCACc-GCCGUCGGUaCucGGCGu -3' miRNA: 3'- -CGGCG-GUGccCGGCAGCUA-GuuUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 47235 | 0.66 | 0.643821 |
Target: 5'- cGCCGCaagggcCGGGCCGUCaccggCGAAGa- -3' miRNA: 3'- -CGGCGgu----GCCCGGCAGcua--GUUUCgu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 45311 | 0.67 | 0.601111 |
Target: 5'- aGCCGUCGCu-GCCGUUGAUgAAcGGCAc -3' miRNA: 3'- -CGGCGGUGccCGGCAGCUAgUU-UCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 45107 | 0.67 | 0.611772 |
Target: 5'- cGCCGCCgcGCGGGCC-UUGGcCGccgccAGGCGg -3' miRNA: 3'- -CGGCGG--UGCCCGGcAGCUaGU-----UUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 45091 | 0.66 | 0.654495 |
Target: 5'- cGCCGCCAgGaGGCCGacuugUCGuUgAAGGUg -3' miRNA: 3'- -CGGCGGUgC-CCGGC-----AGCuAgUUUCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 44381 | 0.67 | 0.589413 |
Target: 5'- cGCUGCCgacgGCGgccagucggcccaGGCCGUUGAUCAGcgguucgauGGCGg -3' miRNA: 3'- -CGGCGG----UGC-------------CCGGCAGCUAGUU---------UCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 42415 | 0.66 | 0.661957 |
Target: 5'- cGCCGaCGCGGGCCaagGUaugggcaggacuggCGGUCAucGCGc -3' miRNA: 3'- -CGGCgGUGCCCGG---CA--------------GCUAGUuuCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 42080 | 0.67 | 0.601111 |
Target: 5'- cGCCGCCA-GGGCCGaCGAacCGccGCc -3' miRNA: 3'- -CGGCGGUgCCCGGCaGCUa-GUuuCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 40662 | 0.66 | 0.665151 |
Target: 5'- gGgUGUCGCGGGCC-UCGAUUucgacgccGAGCAc -3' miRNA: 3'- -CgGCGGUGCCCGGcAGCUAGu-------UUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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