miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 40631 0.7 0.429296
Target:  5'- aCCGCCGCGcGGCCGaCGAacuUgGGGGCc -3'
miRNA:   3'- cGGCGGUGC-CCGGCaGCU---AgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 40233 0.66 0.658761
Target:  5'- cGCCGCCGuagcUGGugaucgaaucgcccaGCaCGUCGAUCAGcgucccGGCAa -3'
miRNA:   3'- -CGGCGGU----GCC---------------CG-GCAGCUAGUU------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 40050 0.72 0.318429
Target:  5'- uGCCGgugcCCACGGcgauaccGCCGUCG-UCAAAGCu -3'
miRNA:   3'- -CGGC----GGUGCC-------CGGCAGCuAGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 39883 0.68 0.558796
Target:  5'- aGCuCGCC-CaGGCCGUCGGUguAgucGGCGg -3'
miRNA:   3'- -CG-GCGGuGcCCGGCAGCUAguU---UCGU- -5'
19100 5' -57.3 NC_004684.1 + 39833 0.72 0.35069
Target:  5'- -aCGCCAcCGGGCCuccuaGUCGAUUAGcuccAGCAg -3'
miRNA:   3'- cgGCGGU-GCCCGG-----CAGCUAGUU----UCGU- -5'
19100 5' -57.3 NC_004684.1 + 39608 0.71 0.393077
Target:  5'- aCCGCCGCGcaCCGUCGggCGGGGUg -3'
miRNA:   3'- cGGCGGUGCccGGCAGCuaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 38823 0.66 0.665151
Target:  5'- aGCCGCCgcacaccggugGCGGGgUGUUGGUgAccGCGa -3'
miRNA:   3'- -CGGCGG-----------UGCCCgGCAGCUAgUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 37162 0.69 0.467407
Target:  5'- aGCgCGCCGaGGGCCacGUCGcgCcGAGCAu -3'
miRNA:   3'- -CG-GCGGUgCCCGG--CAGCuaGuUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 36761 0.66 0.654495
Target:  5'- cGCCGCCA-GGGCCGcgccCGGUgcCGAcGCu -3'
miRNA:   3'- -CGGCGGUgCCCGGCa---GCUA--GUUuCGu -5'
19100 5' -57.3 NC_004684.1 + 34184 0.66 0.665151
Target:  5'- gGCCGCC--GGGCUGUCcGUCGccauGGCc -3'
miRNA:   3'- -CGGCGGugCCCGGCAGcUAGUu---UCGu -5'
19100 5' -57.3 NC_004684.1 + 34126 0.68 0.527613
Target:  5'- uGCuCGUCGCGGuGCUGUUGAgCGAcAGCAc -3'
miRNA:   3'- -CG-GCGGUGCC-CGGCAGCUaGUU-UCGU- -5'
19100 5' -57.3 NC_004684.1 + 33884 0.67 0.602176
Target:  5'- aGCCGCCACcgcccgcgaguacaGGGCCGcCGccgcGUCcaccgcagccccgccGAGGCAg -3'
miRNA:   3'- -CGGCGGUG--------------CCCGGCaGC----UAG---------------UUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 28558 0.69 0.467407
Target:  5'- cGCCaggGCCACcaGGCCGUCGggCAccgccAGGCGg -3'
miRNA:   3'- -CGG---CGGUGc-CCGGCAGCuaGU-----UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 28086 0.68 0.56931
Target:  5'- gGCCGCCGCgcgacccgcaccGGGUgGUgCGGUuCGAGGCc -3'
miRNA:   3'- -CGGCGGUG------------CCCGgCA-GCUA-GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 26976 0.69 0.467407
Target:  5'- cGCCGCCAUccaGGCCGgugCGAgCGcGGCGg -3'
miRNA:   3'- -CGGCGGUGc--CCGGCa--GCUaGUuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 26949 0.67 0.62245
Target:  5'- gGCCGCCugGGcaCCGcUGAcCAAGGCc -3'
miRNA:   3'- -CGGCGGugCCc-GGCaGCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 26808 0.73 0.29627
Target:  5'- -aCGCCACGGGCCgGUUGAUgAAcgacaccAGCGc -3'
miRNA:   3'- cgGCGGUGCCCGG-CAGCUAgUU-------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 26315 0.68 0.558796
Target:  5'- gGCCagGCCGcCGGGCCGcCGAUugcCGAcGCGg -3'
miRNA:   3'- -CGG--CGGU-GCCCGGCaGCUA---GUUuCGU- -5'
19100 5' -57.3 NC_004684.1 + 24869 0.72 0.326861
Target:  5'- cGCCGaCCACGGcggugagcgcGCCGUUGAUCGcguuGGCc -3'
miRNA:   3'- -CGGC-GGUGCC----------CGGCAGCUAGUu---UCGu -5'
19100 5' -57.3 NC_004684.1 + 24775 0.67 0.579872
Target:  5'- aCCGgCAcCGGGCCGcuggUCGAUacggcCAAGGCGg -3'
miRNA:   3'- cGGCgGU-GCCCGGC----AGCUA-----GUUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.