Results 61 - 80 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19100 | 5' | -57.3 | NC_004684.1 | + | 21567 | 0.66 | 0.643821 |
Target: 5'- aCCGCCGa-GGCCGUCaccgGGUCAAugccGCAc -3' miRNA: 3'- cGGCGGUgcCCGGCAG----CUAGUUu---CGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 20802 | 0.69 | 0.497101 |
Target: 5'- cGCCGCCGuCGccGCCGUCGAgcgCGAcugggaauccGGCAc -3' miRNA: 3'- -CGGCGGU-GCc-CGGCAGCUa--GUU----------UCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 19329 | 0.69 | 0.497101 |
Target: 5'- cGCCGCCGcCGuGGCCGagCGG--GAGGCGc -3' miRNA: 3'- -CGGCGGU-GC-CCGGCa-GCUagUUUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 18672 | 0.69 | 0.467407 |
Target: 5'- uGCCGCCGCuGGGCgCGaCGGuaaccaUCAGccAGCAg -3' miRNA: 3'- -CGGCGGUG-CCCG-GCaGCU------AGUU--UCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 18075 | 0.69 | 0.497101 |
Target: 5'- gGCCGCCgACGGGUCGauccuggaCGG-CAAGGCc -3' miRNA: 3'- -CGGCGG-UGCCCGGCa-------GCUaGUUUCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 15514 | 0.7 | 0.448127 |
Target: 5'- gGCCGCC-CgGGGCCGggCGcUgGAGGCGc -3' miRNA: 3'- -CGGCGGuG-CCCGGCa-GCuAgUUUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 13552 | 0.67 | 0.633136 |
Target: 5'- -gCGCCugGcGGCCaUCGGcuacugcgUCGAGGCGg -3' miRNA: 3'- cgGCGGugC-CCGGcAGCU--------AGUUUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 13282 | 0.68 | 0.51736 |
Target: 5'- gGCCGCCGguGGCUGgugCGcgccGUCGGAGCAg -3' miRNA: 3'- -CGGCGGUgcCCGGCa--GC----UAGUUUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 13090 | 0.67 | 0.62245 |
Target: 5'- aGCCGCCAaggGGGCCGaugCGcgCAcccccGGCc -3' miRNA: 3'- -CGGCGGUg--CCCGGCa--GCuaGUu----UCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 12905 | 0.69 | 0.476221 |
Target: 5'- cGCCGCCAgCGGugccggugcGCCGUCGGcCAAcuucgccgccgucGGCAc -3' miRNA: 3'- -CGGCGGU-GCC---------CGGCAGCUaGUU-------------UCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 12450 | 0.66 | 0.643821 |
Target: 5'- --gGCUGCGGGCCGgggagcaaUCGAcCGAGGUAc -3' miRNA: 3'- cggCGGUGCCCGGC--------AGCUaGUUUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 11225 | 0.69 | 0.507187 |
Target: 5'- cGCCGCCGuCGucGCCGUCGucggcCAGGGCc -3' miRNA: 3'- -CGGCGGU-GCc-CGGCAGCua---GUUUCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 10499 | 0.67 | 0.601111 |
Target: 5'- gGCCGaCgCACuGGGCCGccgaCGGUCAgcGCGc -3' miRNA: 3'- -CGGC-G-GUG-CCCGGCa---GCUAGUuuCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 10160 | 0.67 | 0.590475 |
Target: 5'- aGCCGCCGCuGGCCaccgCGcUCGAGGa- -3' miRNA: 3'- -CGGCGGUGcCCGGca--GCuAGUUUCgu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 8779 | 1.1 | 0.000724 |
Target: 5'- aGCCGCCACGGGCCGUCGAUCAAAGCAc -3' miRNA: 3'- -CGGCGGUGCCCGGCAGCUAGUUUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 7971 | 0.68 | 0.56931 |
Target: 5'- gGCCGCCAgGcGGCCGU-GcgCAAcaccuGCAa -3' miRNA: 3'- -CGGCGGUgC-CCGGCAgCuaGUUu----CGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 7331 | 0.66 | 0.654495 |
Target: 5'- gGCCGCC--GGGCCGcgcgccaCGAgugCGAGGCc -3' miRNA: 3'- -CGGCGGugCCCGGCa------GCUa--GUUUCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 6745 | 0.67 | 0.633136 |
Target: 5'- gGCUgGCC-CGGaGCCGUCGGgugcaCGAAGUg -3' miRNA: 3'- -CGG-CGGuGCC-CGGCAGCUa----GUUUCGu -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 4013 | 0.66 | 0.686364 |
Target: 5'- cGCCGCCAuCGgcuggcgcgucGGCCGcUCGGUgCGcuGGGCGg -3' miRNA: 3'- -CGGCGGU-GC-----------CCGGC-AGCUA-GU--UUCGU- -5' |
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19100 | 5' | -57.3 | NC_004684.1 | + | 3799 | 0.68 | 0.537941 |
Target: 5'- cGCCGCCGCcuuGGCgGUCaagGAUCugcuGGGCGc -3' miRNA: 3'- -CGGCGGUGc--CCGgCAG---CUAGu---UUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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