miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 15514 0.7 0.448127
Target:  5'- gGCCGCC-CgGGGCCGggCGcUgGAGGCGc -3'
miRNA:   3'- -CGGCGGuG-CCCGGCa-GCuAgUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3710 0.7 0.438654
Target:  5'- cGCCGCCGCGcuGGCCGgu-AUCAAcGCu -3'
miRNA:   3'- -CGGCGGUGC--CCGGCagcUAGUUuCGu -5'
19100 5' -57.3 NC_004684.1 + 40631 0.7 0.429296
Target:  5'- aCCGCCGCGcGGCCGaCGAacuUgGGGGCc -3'
miRNA:   3'- cGGCGGUGC-CCGGCaGCU---AgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 65067 0.71 0.401053
Target:  5'- cGCCGCCaguucguccugcGCGGugaucauGCCGUCGAgCAGGGUg -3'
miRNA:   3'- -CGGCGG------------UGCC-------CGGCAGCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 26315 0.68 0.558796
Target:  5'- gGCCagGCCGcCGGGCCGcCGAUugcCGAcGCGg -3'
miRNA:   3'- -CGG--CGGU-GCCCGGCaGCUA---GUUuCGU- -5'
19100 5' -57.3 NC_004684.1 + 28086 0.68 0.56931
Target:  5'- gGCCGCCGCgcgacccgcaccGGGUgGUgCGGUuCGAGGCc -3'
miRNA:   3'- -CGGCGGUG------------CCCGgCA-GCUA-GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 3602 0.66 0.675777
Target:  5'- cGUCGCgCACuGGGCCGcCGAacacgaguggcCGAAGCGc -3'
miRNA:   3'- -CGGCG-GUG-CCCGGCaGCUa----------GUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 60354 0.66 0.665151
Target:  5'- uCgGCCAgCGGuGCCagGUCGGUCAGguugGGCAu -3'
miRNA:   3'- cGgCGGU-GCC-CGG--CAGCUAGUU----UCGU- -5'
19100 5' -57.3 NC_004684.1 + 50588 0.66 0.665151
Target:  5'- aGCCuauGCCGuCGGGUCGgCGGUC--GGCGg -3'
miRNA:   3'- -CGG---CGGU-GCCCGGCaGCUAGuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 42415 0.66 0.661957
Target:  5'- cGCCGaCGCGGGCCaagGUaugggcaggacuggCGGUCAucGCGc -3'
miRNA:   3'- -CGGCgGUGCCCGG---CA--------------GCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 45091 0.66 0.654495
Target:  5'- cGCCGCCAgGaGGCCGacuugUCGuUgAAGGUg -3'
miRNA:   3'- -CGGCGGUgC-CCGGC-----AGCuAgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 36761 0.66 0.654495
Target:  5'- cGCCGCCA-GGGCCGcgccCGGUgcCGAcGCu -3'
miRNA:   3'- -CGGCGGUgCCCGGCa---GCUA--GUUuCGu -5'
19100 5' -57.3 NC_004684.1 + 55560 0.66 0.643821
Target:  5'- gGCCGCCGuggccCGguGGCCGggGGUCcAGGCAc -3'
miRNA:   3'- -CGGCGGU-----GC--CCGGCagCUAGuUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 6745 0.67 0.633136
Target:  5'- gGCUgGCC-CGGaGCCGUCGGgugcaCGAAGUg -3'
miRNA:   3'- -CGG-CGGuGCC-CGGCAGCUa----GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 48346 0.67 0.611772
Target:  5'- cGCUGgauCCACGGGCgGUC--UCGGAGUg -3'
miRNA:   3'- -CGGC---GGUGCCCGgCAGcuAGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 45311 0.67 0.601111
Target:  5'- aGCCGUCGCu-GCCGUUGAUgAAcGGCAc -3'
miRNA:   3'- -CGGCGGUGccCGGCAGCUAgUU-UCGU- -5'
19100 5' -57.3 NC_004684.1 + 10499 0.67 0.601111
Target:  5'- gGCCGaCgCACuGGGCCGccgaCGGUCAgcGCGc -3'
miRNA:   3'- -CGGC-G-GUG-CCCGGCa---GCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 62306 0.67 0.590475
Target:  5'- cGCCG-CGCGGGCCuccgCGAUCucaucgccgGAGGCc -3'
miRNA:   3'- -CGGCgGUGCCCGGca--GCUAG---------UUUCGu -5'
19100 5' -57.3 NC_004684.1 + 10160 0.67 0.590475
Target:  5'- aGCCGCCGCuGGCCaccgCGcUCGAGGa- -3'
miRNA:   3'- -CGGCGGUGcCCGGca--GCuAGUUUCgu -5'
19100 5' -57.3 NC_004684.1 + 24775 0.67 0.579872
Target:  5'- aCCGgCAcCGGGCCGcuggUCGAUacggcCAAGGCGg -3'
miRNA:   3'- cGGCgGU-GCCCGGC----AGCUA-----GUUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.