miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 12450 0.66 0.643821
Target:  5'- --gGCUGCGGGCCGgggagcaaUCGAcCGAGGUAc -3'
miRNA:   3'- cggCGGUGCCCGGC--------AGCUaGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 54279 0.67 0.633136
Target:  5'- cGCCGCCACccGGCCGggggugCGcgCAucGGCc -3'
miRNA:   3'- -CGGCGGUGc-CCGGCa-----GCuaGUu-UCGu -5'
19100 5' -57.3 NC_004684.1 + 55740 0.67 0.633136
Target:  5'- gGCCGCCgugcugGCGuGGCCGaugccgaCGGUCA-GGCGg -3'
miRNA:   3'- -CGGCGG------UGC-CCGGCa------GCUAGUuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 3652 0.67 0.633136
Target:  5'- gGCCGCC-CGGuGCCG--GGUCAucGUAc -3'
miRNA:   3'- -CGGCGGuGCC-CGGCagCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 13552 0.67 0.633136
Target:  5'- -gCGCCugGcGGCCaUCGGcuacugcgUCGAGGCGg -3'
miRNA:   3'- cgGCGGugC-CCGGcAGCU--------AGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 6745 0.67 0.633136
Target:  5'- gGCUgGCC-CGGaGCCGUCGGgugcaCGAAGUg -3'
miRNA:   3'- -CGG-CGGuGCC-CGGCAGCUa----GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 13090 0.67 0.62245
Target:  5'- aGCCGCCAaggGGGCCGaugCGcgCAcccccGGCc -3'
miRNA:   3'- -CGGCGGUg--CCCGGCa--GCuaGUu----UCGu -5'
19100 5' -57.3 NC_004684.1 + 26949 0.67 0.62245
Target:  5'- gGCCGCCugGGcaCCGcUGAcCAAGGCc -3'
miRNA:   3'- -CGGCGGugCCc-GGCaGCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 45107 0.67 0.611772
Target:  5'- cGCCGCCgcGCGGGCC-UUGGcCGccgccAGGCGg -3'
miRNA:   3'- -CGGCGG--UGCCCGGcAGCUaGU-----UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 48346 0.67 0.611772
Target:  5'- cGCUGgauCCACGGGCgGUC--UCGGAGUg -3'
miRNA:   3'- -CGGC---GGUGCCCGgCAGcuAGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 33884 0.67 0.602176
Target:  5'- aGCCGCCACcgcccgcgaguacaGGGCCGcCGccgcGUCcaccgcagccccgccGAGGCAg -3'
miRNA:   3'- -CGGCGGUG--------------CCCGGCaGC----UAG---------------UUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 732 0.67 0.601111
Target:  5'- aCCGCCGgugacCGGGCCGcCGc-CGAGGCc -3'
miRNA:   3'- cGGCGGU-----GCCCGGCaGCuaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 42080 0.67 0.601111
Target:  5'- cGCCGCCA-GGGCCGaCGAacCGccGCc -3'
miRNA:   3'- -CGGCGGUgCCCGGCaGCUa-GUuuCGu -5'
19100 5' -57.3 NC_004684.1 + 10499 0.67 0.601111
Target:  5'- gGCCGaCgCACuGGGCCGccgaCGGUCAgcGCGc -3'
miRNA:   3'- -CGGC-G-GUG-CCCGGCa---GCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 45311 0.67 0.601111
Target:  5'- aGCCGUCGCu-GCCGUUGAUgAAcGGCAc -3'
miRNA:   3'- -CGGCGGUGccCGGCAGCUAgUU-UCGU- -5'
19100 5' -57.3 NC_004684.1 + 862 0.67 0.600046
Target:  5'- aCCGCCGugcccgcCGGGCCG-CGcUgAAGGCGg -3'
miRNA:   3'- cGGCGGU-------GCCCGGCaGCuAgUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 10160 0.67 0.590475
Target:  5'- aGCCGCCGCuGGCCaccgCGcUCGAGGa- -3'
miRNA:   3'- -CGGCGGUGcCCGGca--GCuAGUUUCgu -5'
19100 5' -57.3 NC_004684.1 + 62306 0.67 0.590475
Target:  5'- cGCCG-CGCGGGCCuccgCGAUCucaucgccgGAGGCc -3'
miRNA:   3'- -CGGCgGUGCCCGGca--GCUAG---------UUUCGu -5'
19100 5' -57.3 NC_004684.1 + 48972 0.67 0.590475
Target:  5'- gGCCGCCGgugcgcccgcCGGGCCGcCGAagu-AGUAg -3'
miRNA:   3'- -CGGCGGU----------GCCCGGCaGCUaguuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 44381 0.67 0.589413
Target:  5'- cGCUGCCgacgGCGgccagucggcccaGGCCGUUGAUCAGcgguucgauGGCGg -3'
miRNA:   3'- -CGGCGG----UGC-------------CCGGCAGCUAGUU---------UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.