Results 1 - 20 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19101 | 5' | -57 | NC_004684.1 | + | 42716 | 0.66 | 0.704325 |
Target: 5'- cGGCAgGCCUGGaaCCUCACcgccgucggcgaaguGCaGUGCGCg -3' miRNA: 3'- cCUGU-UGGACC--GGGGUG---------------UGaCACGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 52469 | 0.66 | 0.704325 |
Target: 5'- cGACGGCaUGGCCgCCACcaccuccagcgcguuGCgaccgGUGUGCa -3' miRNA: 3'- cCUGUUGgACCGG-GGUG---------------UGa----CACGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 47906 | 0.66 | 0.700122 |
Target: 5'- -aGCAGCggCUGGCUCCagggGCGCaUGUcGCGCg -3' miRNA: 3'- ccUGUUG--GACCGGGG----UGUG-ACA-CGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 19962 | 0.66 | 0.700122 |
Target: 5'- -cGCGACCaggUGGUgCCggaGCACcagGUGCGCa -3' miRNA: 3'- ccUGUUGG---ACCGgGG---UGUGa--CACGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 51764 | 0.66 | 0.700122 |
Target: 5'- -aGCAACCcGGCCUCGCGC---GCGUu -3' miRNA: 3'- ccUGUUGGaCCGGGGUGUGacaCGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 7481 | 0.66 | 0.700122 |
Target: 5'- cGACGuuuugGCCUGGCUgguugucuaCGCGCUGgccgccGCGCg -3' miRNA: 3'- cCUGU-----UGGACCGGg--------GUGUGACa-----CGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 39773 | 0.66 | 0.69907 |
Target: 5'- uGGCGuCCUGGCCgUucucgauGCGCUGguagcUGCGCc -3' miRNA: 3'- cCUGUuGGACCGGgG-------UGUGAC-----ACGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 12060 | 0.66 | 0.689571 |
Target: 5'- cGGCucGCCUGGCCgCCGagcgcgacgaggUGCUGgcccGCGCg -3' miRNA: 3'- cCUGu-UGGACCGG-GGU------------GUGACa---CGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 29660 | 0.66 | 0.688513 |
Target: 5'- cGACGugCUccugcgcgcGGCCgaccagaCCGCGC-GUGCGCg -3' miRNA: 3'- cCUGUugGA---------CCGG-------GGUGUGaCACGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 3960 | 0.66 | 0.683215 |
Target: 5'- cGGACGACCccggccaggucauccUGGCCgguggcagcuCCAguCgaUGUGCGCc -3' miRNA: 3'- -CCUGUUGG---------------ACCGG----------GGUguG--ACACGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 1504 | 0.66 | 0.678968 |
Target: 5'- uGGcCAACCUGcGCgCCGCGCUcaacgGCGa -3' miRNA: 3'- -CCuGUUGGAC-CGgGGUGUGAca---CGCg -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 28058 | 0.66 | 0.678968 |
Target: 5'- uGGGCGGCCaaccGGCCUgggCGCggcaACUGggGCGCu -3' miRNA: 3'- -CCUGUUGGa---CCGGG---GUG----UGACa-CGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 9780 | 0.66 | 0.678968 |
Target: 5'- uGGAaGACCUcuacgccgaGGCCCUGCGCcgGUG-GCa -3' miRNA: 3'- -CCUgUUGGA---------CCGGGGUGUGa-CACgCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 2689 | 0.66 | 0.678968 |
Target: 5'- cGGGCAccgcauccccgGCCUGGCCggugCCggggGCAa-GUGCGCc -3' miRNA: 3'- -CCUGU-----------UGGACCGG----GG----UGUgaCACGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 27893 | 0.66 | 0.668323 |
Target: 5'- cGACGACaguUGGCCCgGC-CUGcGCGa -3' miRNA: 3'- cCUGUUGg--ACCGGGgUGuGACaCGCg -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 57219 | 0.66 | 0.668323 |
Target: 5'- uGGugcuCAGCCUGccggacaaacGCCCCAC-CUGgGCGg -3' miRNA: 3'- -CCu---GUUGGAC----------CGGGGUGuGACaCGCg -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 42772 | 0.66 | 0.668323 |
Target: 5'- aGACGuugGCCUGGCCgCC-CA---UGCGCg -3' miRNA: 3'- cCUGU---UGGACCGG-GGuGUgacACGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 14189 | 0.66 | 0.668323 |
Target: 5'- cGAuCAACgUGcaGCUCC-CGCUGUGCGUc -3' miRNA: 3'- cCU-GUUGgAC--CGGGGuGUGACACGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 30368 | 0.66 | 0.668323 |
Target: 5'- aGGACAAgUuuuacggcguggUGGaCCCCACGCgcaucccgGCGCu -3' miRNA: 3'- -CCUGUUgG------------ACC-GGGGUGUGaca-----CGCG- -5' |
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19101 | 5' | -57 | NC_004684.1 | + | 7687 | 0.66 | 0.667256 |
Target: 5'- gGGACAACCgGGCauuCCAgGCcGUcgccgugGCGCu -3' miRNA: 3'- -CCUGUUGGaCCGg--GGUgUGaCA-------CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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